miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 22328 0.69 0.280009
Target:  5'- uGCGCaGGCCGG-CCGGCGUggGC-GGCg -3'
miRNA:   3'- cCGUG-CUGGCUgGGCCGCGa-CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 22573 0.7 0.242266
Target:  5'- cGGCcuuaGCGGCCGcauGCgCGGCGCUGCUc-- -3'
miRNA:   3'- -CCG----UGCUGGC---UGgGCCGCGACGAccg -5'
24065 5' -61.8 NC_005262.1 + 23616 0.66 0.438491
Target:  5'- uGCGCGGuCCu-CCCGcGCuuccucCUGCUGGCg -3'
miRNA:   3'- cCGUGCU-GGcuGGGC-CGc-----GACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 24331 0.77 0.081456
Target:  5'- cGGCGCGAUCGACaugCGGCuCUGCgucGGCg -3'
miRNA:   3'- -CCGUGCUGGCUGg--GCCGcGACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 24451 0.7 0.260581
Target:  5'- cGuCACGcCCGAUCgaUGGCGCUGCacGGCa -3'
miRNA:   3'- cC-GUGCuGGCUGG--GCCGCGACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 24536 0.66 0.447675
Target:  5'- aGCGCcAUCGAUCgGGCGUgacgGCUcaGGCg -3'
miRNA:   3'- cCGUGcUGGCUGGgCCGCGa---CGA--CCG- -5'
24065 5' -61.8 NC_005262.1 + 24839 0.68 0.345138
Target:  5'- cGGCGCcguGCCGAucaCCCuGCGCcagUGCUcGGCg -3'
miRNA:   3'- -CCGUGc--UGGCU---GGGcCGCG---ACGA-CCG- -5'
24065 5' -61.8 NC_005262.1 + 25020 0.66 0.442152
Target:  5'- cGCGCGGCCauGugcgcaucccgccauGCCuCGGCGUccuccgGCUGGCc -3'
miRNA:   3'- cCGUGCUGG--C---------------UGG-GCCGCGa-----CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 25128 0.71 0.214135
Target:  5'- uGGCGCGcugcuuguCCGACCCuauguGGCGCaucUGCUcggGGCg -3'
miRNA:   3'- -CCGUGCu-------GGCUGGG-----CCGCG---ACGA---CCG- -5'
24065 5' -61.8 NC_005262.1 + 25247 0.67 0.377387
Target:  5'- cGCGCGcaacGCCGGCuCCuGCGCcGCcucUGGCa -3'
miRNA:   3'- cCGUGC----UGGCUG-GGcCGCGaCG---ACCG- -5'
24065 5' -61.8 NC_005262.1 + 25438 0.66 0.411603
Target:  5'- cGCcuACGACaaccuGCCCgaGGCGCUGCgcgaGGCg -3'
miRNA:   3'- cCG--UGCUGgc---UGGG--CCGCGACGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 26544 0.66 0.466357
Target:  5'- cGGCcacuccgaaGCGGCCGACgCGcugcgccaguucGCGCaggcauacGCUGGCg -3'
miRNA:   3'- -CCG---------UGCUGGCUGgGC------------CGCGa-------CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 27164 0.67 0.38576
Target:  5'- cGGCAC-ACCGGCCgcauggugUGGUGCcgUGCUGuGUg -3'
miRNA:   3'- -CCGUGcUGGCUGG--------GCCGCG--ACGAC-CG- -5'
24065 5' -61.8 NC_005262.1 + 28018 0.69 0.273408
Target:  5'- cGGCGa-GCCGAUCUacgcgGGCGCcgagaGCUGGCg -3'
miRNA:   3'- -CCGUgcUGGCUGGG-----CCGCGa----CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 29932 0.67 0.369137
Target:  5'- cGGCGauagcUGAaggaCGACCCGGaCGCggGCggcGGCg -3'
miRNA:   3'- -CCGU-----GCUg---GCUGGGCC-GCGa-CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 30051 0.66 0.419563
Target:  5'- gGGCAaGACCGACgaugcugCCGGCGaCgacgacGCcGGCa -3'
miRNA:   3'- -CCGUgCUGGCUG-------GGCCGC-Ga-----CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 30201 0.69 0.297763
Target:  5'- cGGCACGAUCGugggcuucgcggcGgCCGGCGUgucgucgcccuucuUGCcGGCg -3'
miRNA:   3'- -CCGUGCUGGC-------------UgGGCCGCG--------------ACGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 31054 0.66 0.438491
Target:  5'- uGGUGCuGACCGACgCCGacGCGCUcGCcgaccugaagGGCg -3'
miRNA:   3'- -CCGUG-CUGGCUG-GGC--CGCGA-CGa---------CCG- -5'
24065 5' -61.8 NC_005262.1 + 32968 0.66 0.438491
Target:  5'- uGGC-CGACguuCGACgCGGCGaacGCUcGGCg -3'
miRNA:   3'- -CCGuGCUG---GCUGgGCCGCga-CGA-CCG- -5'
24065 5' -61.8 NC_005262.1 + 33945 0.67 0.357796
Target:  5'- gGGCACGcggcaAgCGAuCCCGGaacgcggcgucgaGCUGCUGGa -3'
miRNA:   3'- -CCGUGC-----UgGCU-GGGCCg------------CGACGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.