miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 63270 0.67 0.360206
Target:  5'- uGGCA--GCCGccGCCugcuugaCGGCcgGCUGCUGGCu -3'
miRNA:   3'- -CCGUgcUGGC--UGG-------GCCG--CGACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 63155 0.67 0.369137
Target:  5'- cGGCAa-ACCGAaCaaGCGCUGCUGGg -3'
miRNA:   3'- -CCGUgcUGGCUgGgcCGCGACGACCg -5'
24065 5' -61.8 NC_005262.1 + 63142 0.73 0.149924
Target:  5'- -cCGCGAUgaCGugCCGGCGCaUGCUGGa -3'
miRNA:   3'- ccGUGCUG--GCugGGCCGCG-ACGACCg -5'
24065 5' -61.8 NC_005262.1 + 62989 0.69 0.273408
Target:  5'- uGCGCG-CCaGCUcguCGGCGC-GCUGGCg -3'
miRNA:   3'- cCGUGCuGGcUGG---GCCGCGaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 62903 0.66 0.419563
Target:  5'- aGCGCG-CCGACgagCUGGCGC-GCaaucucaUGGCa -3'
miRNA:   3'- cCGUGCuGGCUG---GGCCGCGaCG-------ACCG- -5'
24065 5' -61.8 NC_005262.1 + 62722 0.71 0.214135
Target:  5'- cGCACGcACCcugaUCGGCGC-GCUGGCg -3'
miRNA:   3'- cCGUGC-UGGcug-GGCCGCGaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 61778 0.66 0.420452
Target:  5'- cGCGcCGACCGACCa-GCGCguuuucgccUGCgcGGCg -3'
miRNA:   3'- cCGU-GCUGGCUGGgcCGCG---------ACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 61705 0.66 0.420452
Target:  5'- gGGCGCG-CCGgguucGCUCGGCGC-GCUcuGCu -3'
miRNA:   3'- -CCGUGCuGGC-----UGGGCCGCGaCGAc-CG- -5'
24065 5' -61.8 NC_005262.1 + 60837 0.66 0.438491
Target:  5'- cGGCcuacGCGAUCGGCgUGGCGaugGCcgaGGCa -3'
miRNA:   3'- -CCG----UGCUGGCUGgGCCGCga-CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 60735 0.66 0.466357
Target:  5'- aGG-ACcGCUGGCUCGGCGaagGCUGGg -3'
miRNA:   3'- -CCgUGcUGGCUGGGCCGCga-CGACCg -5'
24065 5' -61.8 NC_005262.1 + 60613 0.7 0.248249
Target:  5'- gGGCACGGCgaacGCCauGCGCacGCUGGCg -3'
miRNA:   3'- -CCGUGCUGgc--UGGgcCGCGa-CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 60556 0.75 0.118429
Target:  5'- gGGCACG-CUGACgCCGGCGCU-C-GGCg -3'
miRNA:   3'- -CCGUGCuGGCUG-GGCCGCGAcGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 60202 0.67 0.394255
Target:  5'- cGGCAaggagcCGGCCGGCgaggUCGGCaaGCUGCUGa- -3'
miRNA:   3'- -CCGU------GCUGGCUG----GGCCG--CGACGACcg -5'
24065 5' -61.8 NC_005262.1 + 60147 0.67 0.369137
Target:  5'- aGGCAUGGgCGAaguaCCCGGCcGCcGUgaaGGCg -3'
miRNA:   3'- -CCGUGCUgGCU----GGGCCG-CGaCGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 59461 0.74 0.128175
Target:  5'- uGCGCGAgCGccuggaGCUCGGCGUUGCcGGCg -3'
miRNA:   3'- cCGUGCUgGC------UGGGCCGCGACGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 59224 0.66 0.411603
Target:  5'- cGCGCGGCgacgCGGCCCGGCcgGUUcGCcucGGCg -3'
miRNA:   3'- cCGUGCUG----GCUGGGCCG--CGA-CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 59069 0.67 0.369137
Target:  5'- cGGCGCGGgaGGCgugaggccgCCGGCGgCcgGCUGGUu -3'
miRNA:   3'- -CCGUGCUggCUG---------GGCCGC-Ga-CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 58915 0.67 0.402869
Target:  5'- aGGCcgGCGGcCCGACCgaUGGCGCgcGCUucucggucGGCg -3'
miRNA:   3'- -CCG--UGCU-GGCUGG--GCCGCGa-CGA--------CCG- -5'
24065 5' -61.8 NC_005262.1 + 58826 0.68 0.353011
Target:  5'- aGGCAUGGCUGcUgCGGCGCUuC-GGCa -3'
miRNA:   3'- -CCGUGCUGGCuGgGCCGCGAcGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 58658 0.66 0.46071
Target:  5'- cGCGCGAguucuacgaucaagcCCGAgCCCGcguugcgaGCGCgcaacaaGCUGGCg -3'
miRNA:   3'- cCGUGCU---------------GGCU-GGGC--------CGCGa------CGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.