miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 58505 0.67 0.360206
Target:  5'- cGGCGaaccugaaccaguCGACCGcccuGCCCGuGCuGCUGCacgaGGCg -3'
miRNA:   3'- -CCGU-------------GCUGGC----UGGGC-CG-CGACGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 57667 0.72 0.174977
Target:  5'- cGGCACGAUCGACUucuCGcGCGCcggGCgcGGCa -3'
miRNA:   3'- -CCGUGCUGGCUGG---GC-CGCGa--CGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 57619 0.73 0.16581
Target:  5'- cGGUACGACCuGaucgcggucgauGCCCGGCGCgacGCUgaacuucGGCg -3'
miRNA:   3'- -CCGUGCUGG-C------------UGGGCCGCGa--CGA-------CCG- -5'
24065 5' -61.8 NC_005262.1 + 57340 0.66 0.4579
Target:  5'- gGGCGCG-CCGuuCCCGGaacagGCUGagcuccuggacaagaUGGCg -3'
miRNA:   3'- -CCGUGCuGGCu-GGGCCg----CGACg--------------ACCG- -5'
24065 5' -61.8 NC_005262.1 + 56945 0.67 0.394255
Target:  5'- cGCACG-CCGAUCC-GCGCggGCgaguucgcgGGCg -3'
miRNA:   3'- cCGUGCuGGCUGGGcCGCGa-CGa--------CCG- -5'
24065 5' -61.8 NC_005262.1 + 55729 0.71 0.230661
Target:  5'- cGGaCGCGGCCacgagcgcgcGGCCCGGCuucuuGCUGCgcaGGUa -3'
miRNA:   3'- -CC-GUGCUGG----------CUGGGCCG-----CGACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 54508 0.73 0.149924
Target:  5'- gGGCcCGACCGACaucaCGGUGaaGCUGGg -3'
miRNA:   3'- -CCGuGCUGGCUGg---GCCGCgaCGACCg -5'
24065 5' -61.8 NC_005262.1 + 54442 0.66 0.453237
Target:  5'- cGCGCGcGCCGACCggaaguaUcagcgcaacgucgaGGCGCUGCUcGCg -3'
miRNA:   3'- cCGUGC-UGGCUGG-------G--------------CCGCGACGAcCG- -5'
24065 5' -61.8 NC_005262.1 + 54343 0.76 0.090719
Target:  5'- cGGCAccuCGAUCuacgagGACCCGGCGaaggGCUGGCa -3'
miRNA:   3'- -CCGU---GCUGG------CUGGGCCGCga--CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 53819 0.71 0.230661
Target:  5'- cGGCACGggcaucgaGCUGACgcaCCGGCGCgGCgcggacGGCa -3'
miRNA:   3'- -CCGUGC--------UGGCUG---GGCCGCGaCGa-----CCG- -5'
24065 5' -61.8 NC_005262.1 + 53793 0.66 0.456965
Target:  5'- cGGCcuuCGACgCGGCCgGGUuCUGCgcgcccGGCu -3'
miRNA:   3'- -CCGu--GCUG-GCUGGgCCGcGACGa-----CCG- -5'
24065 5' -61.8 NC_005262.1 + 53595 0.68 0.345138
Target:  5'- -uCugGGCCGGCCCcugcGGCGuCUGCacuucGGCc -3'
miRNA:   3'- ccGugCUGGCUGGG----CCGC-GACGa----CCG- -5'
24065 5' -61.8 NC_005262.1 + 52796 0.71 0.219528
Target:  5'- aGCGCGGCCucgUCCGGCGUcgGCcGGCg -3'
miRNA:   3'- cCGUGCUGGcu-GGGCCGCGa-CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 52701 0.71 0.219528
Target:  5'- aGGCcgcCGGCCGACgCCGgacgaggccGCGCUGCUGa- -3'
miRNA:   3'- -CCGu--GCUGGCUG-GGC---------CGCGACGACcg -5'
24065 5' -61.8 NC_005262.1 + 51881 0.68 0.322279
Target:  5'- aGCACGACCGAgCCGaGCcGCcGaacGGCa -3'
miRNA:   3'- cCGUGCUGGCUgGGC-CG-CGaCga-CCG- -5'
24065 5' -61.8 NC_005262.1 + 51830 0.69 0.300571
Target:  5'- aGCGCGGCCGACgUGcGCGaagUGCUGaaGCg -3'
miRNA:   3'- cCGUGCUGGCUGgGC-CGCg--ACGAC--CG- -5'
24065 5' -61.8 NC_005262.1 + 51738 0.66 0.456965
Target:  5'- aGCugauCGACCaGCUCGGCaa-GCUGGCu -3'
miRNA:   3'- cCGu---GCUGGcUGGGCCGcgaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 51466 0.72 0.179499
Target:  5'- aGGCGCGGCCuuGgCCGGCGUcGCggacGGCg -3'
miRNA:   3'- -CCGUGCUGGc-UgGGCCGCGaCGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 51268 0.66 0.411603
Target:  5'- cGGCAa-GCUGAaccucaCCGGCcgccgGCUGCUGcGCa -3'
miRNA:   3'- -CCGUgcUGGCUg-----GGCCG-----CGACGAC-CG- -5'
24065 5' -61.8 NC_005262.1 + 50519 0.69 0.280009
Target:  5'- cGGCACGACgacgugcacgCGGCCCucGCGCUccGC-GGCg -3'
miRNA:   3'- -CCGUGCUG----------GCUGGGc-CGCGA--CGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.