miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 13467 0.71 0.216278
Target:  5'- gGGCGCGAa--GCCCGcGCGCgucgcgcgcuacucGCUGGCg -3'
miRNA:   3'- -CCGUGCUggcUGGGC-CGCGa-------------CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 34755 0.72 0.188377
Target:  5'- uGCGCG-UCGugCCGGCGCcGCUcgagcucGGCg -3'
miRNA:   3'- cCGUGCuGGCugGGCCGCGaCGA-------CCG- -5'
24065 5' -61.8 NC_005262.1 + 9140 0.72 0.190776
Target:  5'- cGGCGCcgGGCCGgucggaaugcggaucACCCGGCGCcuucacGCaUGGCg -3'
miRNA:   3'- -CCGUG--CUGGC---------------UGGGCCGCGa-----CG-ACCG- -5'
24065 5' -61.8 NC_005262.1 + 34633 0.72 0.193691
Target:  5'- cGGCAaGAagcUCGACCCGGCGUcGCucgacUGGCu -3'
miRNA:   3'- -CCGUgCU---GGCUGGGCCGCGaCG-----ACCG- -5'
24065 5' -61.8 NC_005262.1 + 43617 0.72 0.198636
Target:  5'- aGGUgACGcucGCCGGCaCCGGCGCagaaCUGGCa -3'
miRNA:   3'- -CCG-UGC---UGGCUG-GGCCGCGac--GACCG- -5'
24065 5' -61.8 NC_005262.1 + 11769 0.71 0.210954
Target:  5'- uGGCGCGGcCCGACCUGgGCGC-GCUccucuacccucacaaGGUg -3'
miRNA:   3'- -CCGUGCU-GGCUGGGC-CGCGaCGA---------------CCG- -5'
24065 5' -61.8 NC_005262.1 + 25128 0.71 0.214135
Target:  5'- uGGCGCGcugcuuguCCGACCCuauguGGCGCaucUGCUcggGGCg -3'
miRNA:   3'- -CCGUGCu-------GGCUGGG-----CCGCG---ACGA---CCG- -5'
24065 5' -61.8 NC_005262.1 + 35150 0.71 0.214135
Target:  5'- uGCAUaccGCCGAUCCGG-GCgacGCUGGCg -3'
miRNA:   3'- cCGUGc--UGGCUGGGCCgCGa--CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 62722 0.71 0.214135
Target:  5'- cGCACGcACCcugaUCGGCGC-GCUGGCg -3'
miRNA:   3'- cCGUGC-UGGcug-GGCCGCGaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 6051 0.72 0.179499
Target:  5'- cGGCACGAuaCCGcACCaCGGgGUUGCgucaGGCc -3'
miRNA:   3'- -CCGUGCU--GGC-UGG-GCCgCGACGa---CCG- -5'
24065 5' -61.8 NC_005262.1 + 57667 0.72 0.174977
Target:  5'- cGGCACGAUCGACUucuCGcGCGCcggGCgcGGCa -3'
miRNA:   3'- -CCGUGCUGGCUGG---GC-CGCGa--CGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 43838 0.72 0.170557
Target:  5'- gGGC-CGGCCGcGCgCGGCGgUGCgccGGCa -3'
miRNA:   3'- -CCGuGCUGGC-UGgGCCGCgACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 24331 0.77 0.081456
Target:  5'- cGGCGCGAUCGACaugCGGCuCUGCgucGGCg -3'
miRNA:   3'- -CCGUGCUGGCUGg--GCCGcGACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 5081 0.76 0.090719
Target:  5'- cGGCgcguGCGACCGGCUCGGCGgUGCgcgcccGGUu -3'
miRNA:   3'- -CCG----UGCUGGCUGGGCCGCgACGa-----CCG- -5'
24065 5' -61.8 NC_005262.1 + 54343 0.76 0.090719
Target:  5'- cGGCAccuCGAUCuacgagGACCCGGCGaaggGCUGGCa -3'
miRNA:   3'- -CCGU---GCUGG------CUGGGCCGCga--CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 49840 0.75 0.11232
Target:  5'- cGCGCGAauGGCCCGGUGCcgGC-GGCg -3'
miRNA:   3'- cCGUGCUggCUGGGCCGCGa-CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 60556 0.75 0.118429
Target:  5'- gGGCACG-CUGACgCCGGCGCU-C-GGCg -3'
miRNA:   3'- -CCGUGCuGGCUG-GGCCGCGAcGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 341 0.74 0.13508
Target:  5'- uGGCGacagUGACCGGCuCCGGCuGCUgGgUGGCg -3'
miRNA:   3'- -CCGU----GCUGGCUG-GGCCG-CGA-CgACCG- -5'
24065 5' -61.8 NC_005262.1 + 54508 0.73 0.149924
Target:  5'- gGGCcCGACCGACaucaCGGUGaaGCUGGg -3'
miRNA:   3'- -CCGuGCUGGCUGg---GCCGCgaCGACCg -5'
24065 5' -61.8 NC_005262.1 + 1053 0.73 0.158298
Target:  5'- aGGCGCGAUCGGCCCGGagccgacaaagaagaGCUGCc--- -3'
miRNA:   3'- -CCGUGCUGGCUGGGCCg--------------CGACGaccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.