miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 60556 0.75 0.118429
Target:  5'- gGGCACG-CUGACgCCGGCGCU-C-GGCg -3'
miRNA:   3'- -CCGUGCuGGCUG-GGCCGCGAcGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 49840 0.75 0.11232
Target:  5'- cGCGCGAauGGCCCGGUGCcgGC-GGCg -3'
miRNA:   3'- cCGUGCUggCUGGGCCGCGa-CGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 54343 0.76 0.090719
Target:  5'- cGGCAccuCGAUCuacgagGACCCGGCGaaggGCUGGCa -3'
miRNA:   3'- -CCGU---GCUGG------CUGGGCCGCga--CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 5081 0.76 0.090719
Target:  5'- cGGCgcguGCGACCGGCUCGGCGgUGCgcgcccGGUu -3'
miRNA:   3'- -CCG----UGCUGGCUGGGCCGCgACGa-----CCG- -5'
24065 5' -61.8 NC_005262.1 + 24331 0.77 0.081456
Target:  5'- cGGCGCGAUCGACaugCGGCuCUGCgucGGCg -3'
miRNA:   3'- -CCGUGCUGGCUGg--GCCGcGACGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 34633 0.72 0.193691
Target:  5'- cGGCAaGAagcUCGACCCGGCGUcGCucgacUGGCu -3'
miRNA:   3'- -CCGUgCU---GGCUGGGCCGCGaCG-----ACCG- -5'
24065 5' -61.8 NC_005262.1 + 43617 0.72 0.198636
Target:  5'- aGGUgACGcucGCCGGCaCCGGCGCagaaCUGGCa -3'
miRNA:   3'- -CCG-UGC---UGGCUG-GGCCGCGac--GACCG- -5'
24065 5' -61.8 NC_005262.1 + 28018 0.69 0.273408
Target:  5'- cGGCGa-GCCGAUCUacgcgGGCGCcgagaGCUGGCg -3'
miRNA:   3'- -CCGUgcUGGCUGGG-----CCGCGa----CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 24451 0.7 0.260581
Target:  5'- cGuCACGcCCGAUCgaUGGCGCUGCacGGCa -3'
miRNA:   3'- cC-GUGCuGGCUGG--GCCGCGACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 5159 0.7 0.254354
Target:  5'- cGGCGCG-CUGAUcggugacggCCGGCGUcGCgGGCg -3'
miRNA:   3'- -CCGUGCuGGCUG---------GGCCGCGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 60613 0.7 0.248249
Target:  5'- gGGCACGGCgaacGCCauGCGCacGCUGGCg -3'
miRNA:   3'- -CCGUGCUGgc--UGGgcCGCGa-CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 22573 0.7 0.242266
Target:  5'- cGGCcuuaGCGGCCGcauGCgCGGCGCUGCUc-- -3'
miRNA:   3'- -CCG----UGCUGGC---UGgGCCGCGACGAccg -5'
24065 5' -61.8 NC_005262.1 + 38064 0.7 0.242266
Target:  5'- cGGCACGGCCG--CUGGCGCgaucuUGCUGa- -3'
miRNA:   3'- -CCGUGCUGGCugGGCCGCG-----ACGACcg -5'
24065 5' -61.8 NC_005262.1 + 53819 0.71 0.230661
Target:  5'- cGGCACGggcaucgaGCUGACgcaCCGGCGCgGCgcggacGGCa -3'
miRNA:   3'- -CCGUGC--------UGGCUG---GGCCGCGaCGa-----CCG- -5'
24065 5' -61.8 NC_005262.1 + 52701 0.71 0.219528
Target:  5'- aGGCcgcCGGCCGACgCCGgacgaggccGCGCUGCUGa- -3'
miRNA:   3'- -CCGu--GCUGGCUG-GGC---------CGCGACGACcg -5'
24065 5' -61.8 NC_005262.1 + 13467 0.71 0.216278
Target:  5'- gGGCGCGAa--GCCCGcGCGCgucgcgcgcuacucGCUGGCg -3'
miRNA:   3'- -CCGUGCUggcUGGGC-CGCGa-------------CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 62722 0.71 0.214135
Target:  5'- cGCACGcACCcugaUCGGCGC-GCUGGCg -3'
miRNA:   3'- cCGUGC-UGGcug-GGCCGCGaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 35150 0.71 0.214135
Target:  5'- uGCAUaccGCCGAUCCGG-GCgacGCUGGCg -3'
miRNA:   3'- cCGUGc--UGGCUGGGCCgCGa--CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 25128 0.71 0.214135
Target:  5'- uGGCGCGcugcuuguCCGACCCuauguGGCGCaucUGCUcggGGCg -3'
miRNA:   3'- -CCGUGCu-------GGCUGGG-----CCGCG---ACGA---CCG- -5'
24065 5' -61.8 NC_005262.1 + 11769 0.71 0.210954
Target:  5'- uGGCGCGGcCCGACCUGgGCGC-GCUccucuacccucacaaGGUg -3'
miRNA:   3'- -CCGUGCU-GGCUGGGC-CGCGaCGA---------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.