miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24065 5' -61.8 NC_005262.1 + 13465 0.66 0.466357
Target:  5'- uGCGCG-C--GCCCaGGCGCaggauuccgUGCUGGCg -3'
miRNA:   3'- cCGUGCuGgcUGGG-CCGCG---------ACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 2593 0.67 0.402869
Target:  5'- --gACGACCGcucuAUCgGGuUGCUGCUGGUc -3'
miRNA:   3'- ccgUGCUGGC----UGGgCC-GCGACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 49055 0.67 0.394255
Target:  5'- aGCGCcGCCuGCaucugCGGCGUcaUGCUGGCg -3'
miRNA:   3'- cCGUGcUGGcUGg----GCCGCG--ACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 42237 0.8 0.052695
Target:  5'- cGGcCGCGACCgGGCCCGGCGCcGCguagaccGGCu -3'
miRNA:   3'- -CC-GUGCUGG-CUGGGCCGCGaCGa------CCG- -5'
24065 5' -61.8 NC_005262.1 + 48383 0.66 0.451379
Target:  5'- aGCGCaGGCCGGCCUcgaGGUuguuccaagcaucgcGCUGCccGGCa -3'
miRNA:   3'- cCGUG-CUGGCUGGG---CCG---------------CGACGa-CCG- -5'
24065 5' -61.8 NC_005262.1 + 11720 0.66 0.447675
Target:  5'- cGGCGCcGCCGAgCCgauGGUGCaGggGGCa -3'
miRNA:   3'- -CCGUGcUGGCUgGG---CCGCGaCgaCCG- -5'
24065 5' -61.8 NC_005262.1 + 50081 0.66 0.447675
Target:  5'- cGGCGCGGCUucaucggcggGAgCgGGCGCcGCUgucucgucGGCg -3'
miRNA:   3'- -CCGUGCUGG----------CUgGgCCGCGaCGA--------CCG- -5'
24065 5' -61.8 NC_005262.1 + 25020 0.66 0.442152
Target:  5'- cGCGCGGCCauGugcgcaucccgccauGCCuCGGCGUccuccgGCUGGCc -3'
miRNA:   3'- cCGUGCUGG--C---------------UGG-GCCGCGa-----CGACCG- -5'
24065 5' -61.8 NC_005262.1 + 43914 0.66 0.438491
Target:  5'- cGCGCGGCCGGCCCGcggccGUGUcGCc-GCg -3'
miRNA:   3'- cCGUGCUGGCUGGGC-----CGCGaCGacCG- -5'
24065 5' -61.8 NC_005262.1 + 5176 0.66 0.410724
Target:  5'- gGGCGCGcaccGCCGAgCCGGUcgcacgcgccgccGCcGCgGGCc -3'
miRNA:   3'- -CCGUGC----UGGCUgGGCCG-------------CGaCGaCCG- -5'
24065 5' -61.8 NC_005262.1 + 41266 0.66 0.429416
Target:  5'- gGGCGCGcACgCGAUCgCGGCGgUGCccuccUGcGCg -3'
miRNA:   3'- -CCGUGC-UG-GCUGG-GCCGCgACG-----AC-CG- -5'
24065 5' -61.8 NC_005262.1 + 23616 0.66 0.438491
Target:  5'- uGCGCGGuCCu-CCCGcGCuuccucCUGCUGGCg -3'
miRNA:   3'- cCGUGCU-GGcuGGGC-CGc-----GACGACCG- -5'
24065 5' -61.8 NC_005262.1 + 49248 0.66 0.466357
Target:  5'- cGCuGCGGCCGAUgCGGC-CUGCacGCc -3'
miRNA:   3'- cCG-UGCUGGCUGgGCCGcGACGacCG- -5'
24065 5' -61.8 NC_005262.1 + 47439 0.66 0.420452
Target:  5'- aGGUccauGCGGCCuuUCUGGCGCUGCgucucGaGCg -3'
miRNA:   3'- -CCG----UGCUGGcuGGGCCGCGACGa----C-CG- -5'
24065 5' -61.8 NC_005262.1 + 44871 0.66 0.466357
Target:  5'- aGCucguCGAgcUCGGCCUGccGCGC-GCUGGCg -3'
miRNA:   3'- cCGu---GCU--GGCUGGGC--CGCGaCGACCG- -5'
24065 5' -61.8 NC_005262.1 + 32968 0.66 0.438491
Target:  5'- uGGC-CGACguuCGACgCGGCGaacGCUcGGCg -3'
miRNA:   3'- -CCGuGCUG---GCUGgGCCGCga-CGA-CCG- -5'
24065 5' -61.8 NC_005262.1 + 59224 0.66 0.411603
Target:  5'- cGCGCGGCgacgCGGCCCGGCcgGUUcGCcucGGCg -3'
miRNA:   3'- cCGUGCUG----GCUGGGCCG--CGA-CGa--CCG- -5'
24065 5' -61.8 NC_005262.1 + 14239 0.67 0.394255
Target:  5'- cGGCGCGGCgGAcaauCCCGGCGCacGCc--- -3'
miRNA:   3'- -CCGUGCUGgCU----GGGCCGCGa-CGaccg -5'
24065 5' -61.8 NC_005262.1 + 53793 0.66 0.456965
Target:  5'- cGGCcuuCGACgCGGCCgGGUuCUGCgcgcccGGCu -3'
miRNA:   3'- -CCGu--GCUG-GCUGGgCCGcGACGa-----CCG- -5'
24065 5' -61.8 NC_005262.1 + 24536 0.66 0.447675
Target:  5'- aGCGCcAUCGAUCgGGCGUgacgGCUcaGGCg -3'
miRNA:   3'- cCGUGcUGGCUGGgCCGCGa---CGA--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.