Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24065 | 5' | -61.8 | NC_005262.1 | + | 14640 | 0.67 | 0.38576 |
Target: 5'- cGGCgagACGccuGCCGAUCCaGCGCaUGCacGGCa -3' miRNA: 3'- -CCG---UGC---UGGCUGGGcCGCG-ACGa-CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 49055 | 0.67 | 0.394255 |
Target: 5'- aGCGCcGCCuGCaucugCGGCGUcaUGCUGGCg -3' miRNA: 3'- cCGUGcUGGcUGg----GCCGCG--ACGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 23616 | 0.66 | 0.438491 |
Target: 5'- uGCGCGGuCCu-CCCGcGCuuccucCUGCUGGCg -3' miRNA: 3'- cCGUGCU-GGcuGGGC-CGc-----GACGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 53793 | 0.66 | 0.456965 |
Target: 5'- cGGCcuuCGACgCGGCCgGGUuCUGCgcgcccGGCu -3' miRNA: 3'- -CCGu--GCUG-GCUGGgCCGcGACGa-----CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 34118 | 0.69 | 0.29359 |
Target: 5'- uGC-CGAUCGACgCGGCGCacgaUGCggcccGGCg -3' miRNA: 3'- cCGuGCUGGCUGgGCCGCG----ACGa----CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 40661 | 0.68 | 0.337391 |
Target: 5'- aGCGCGACggucgCGGCaccgCCGGUGUUGCccGGCg -3' miRNA: 3'- cCGUGCUG-----GCUG----GGCCGCGACGa-CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 2593 | 0.67 | 0.402869 |
Target: 5'- --gACGACCGcucuAUCgGGuUGCUGCUGGUc -3' miRNA: 3'- ccgUGCUGGC----UGGgCC-GCGACGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 44871 | 0.66 | 0.466357 |
Target: 5'- aGCucguCGAgcUCGGCCUGccGCGC-GCUGGCg -3' miRNA: 3'- cCGu---GCU--GGCUGGGC--CGCGaCGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 53595 | 0.68 | 0.345138 |
Target: 5'- -uCugGGCCGGCCCcugcGGCGuCUGCacuucGGCc -3' miRNA: 3'- ccGugCUGGCUGGG----CCGC-GACGa----CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 49248 | 0.66 | 0.466357 |
Target: 5'- cGCuGCGGCCGAUgCGGC-CUGCacGCc -3' miRNA: 3'- cCG-UGCUGGCUGgGCCGcGACGacCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 14239 | 0.67 | 0.394255 |
Target: 5'- cGGCGCGGCgGAcaauCCCGGCGCacGCc--- -3' miRNA: 3'- -CCGUGCUGgCU----GGGCCGCGa-CGaccg -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 35307 | 0.67 | 0.377387 |
Target: 5'- cGCGCcGCCGACCuccgcauccuugCGGaCGUagGCUGGCc -3' miRNA: 3'- cCGUGcUGGCUGG------------GCC-GCGa-CGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 47439 | 0.66 | 0.420452 |
Target: 5'- aGGUccauGCGGCCuuUCUGGCGCUGCgucucGaGCg -3' miRNA: 3'- -CCG----UGCUGGcuGGGCCGCGACGa----C-CG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 43914 | 0.66 | 0.438491 |
Target: 5'- cGCGCGGCCGGCCCGcggccGUGUcGCc-GCg -3' miRNA: 3'- cCGUGCUGGCUGGGC-----CGCGaCGacCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 50081 | 0.66 | 0.447675 |
Target: 5'- cGGCGCGGCUucaucggcggGAgCgGGCGCcGCUgucucgucGGCg -3' miRNA: 3'- -CCGUGCUGG----------CUgGgCCGCGaCGA--------CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 48383 | 0.66 | 0.451379 |
Target: 5'- aGCGCaGGCCGGCCUcgaGGUuguuccaagcaucgcGCUGCccGGCa -3' miRNA: 3'- cCGUG-CUGGCUGGG---CCG---------------CGACGa-CCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 62989 | 0.69 | 0.273408 |
Target: 5'- uGCGCG-CCaGCUcguCGGCGC-GCUGGCg -3' miRNA: 3'- cCGUGCuGGcUGG---GCCGCGaCGACCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 50519 | 0.69 | 0.280009 |
Target: 5'- cGGCACGACgacgugcacgCGGCCCucGCGCUccGC-GGCg -3' miRNA: 3'- -CCGUGCUG----------GCUGGGc-CGCGA--CGaCCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 43773 | 0.68 | 0.314915 |
Target: 5'- cGCGCGAauUCGGCCCGGCuugGCUuGCg -3' miRNA: 3'- cCGUGCU--GGCUGGGCCGcgaCGAcCG- -5' |
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24065 | 5' | -61.8 | NC_005262.1 | + | 48775 | 0.68 | 0.337391 |
Target: 5'- cGGCGCGGcguCCGGCUgGaacGCGCUGgCcGGCa -3' miRNA: 3'- -CCGUGCU---GGCUGGgC---CGCGAC-GaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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