miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 35105 0.66 0.787133
Target:  5'- -uGCGUGGCGucgccuUCCCGcuGC-CGACc -3'
miRNA:   3'- uuCGCGCCGCuuu---AGGGCu-UGuGCUG- -5'
24066 3' -54.6 NC_005262.1 + 53641 0.66 0.787133
Target:  5'- -uGCGCGcCGAGcaccAUCUCGGgguACGCGGCg -3'
miRNA:   3'- uuCGCGCcGCUU----UAGGGCU---UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 22499 0.66 0.787133
Target:  5'- cGAGCagGCGGCGcucGAUCagugCGAACGCGGg -3'
miRNA:   3'- -UUCG--CGCCGCu--UUAGg---GCUUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 26920 0.66 0.787133
Target:  5'- -cGCGCGaCGA--UCCCGAGC-CGGa -3'
miRNA:   3'- uuCGCGCcGCUuuAGGGCUUGuGCUg -5'
24066 3' -54.6 NC_005262.1 + 8121 0.66 0.787133
Target:  5'- -cGCGCuGCGucAGUCCUG-ACGCGAg -3'
miRNA:   3'- uuCGCGcCGCu-UUAGGGCuUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 46174 0.66 0.777173
Target:  5'- cGGCGCGGCc--GUCCUcccaauaugcgGAGCACGuCa -3'
miRNA:   3'- uUCGCGCCGcuuUAGGG-----------CUUGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 60483 0.66 0.777173
Target:  5'- -uGCGCgaucagGGCGAGAcgCCgGGccGCGCGGCg -3'
miRNA:   3'- uuCGCG------CCGCUUUa-GGgCU--UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 21426 0.66 0.777173
Target:  5'- -cGCGaCGGcCGAcGUCCgCGAGCugGuCg -3'
miRNA:   3'- uuCGC-GCC-GCUuUAGG-GCUUGugCuG- -5'
24066 3' -54.6 NC_005262.1 + 9435 0.66 0.777173
Target:  5'- cGAGCGgGuGCGAAG-CCCGcAUuguGCGGCa -3'
miRNA:   3'- -UUCGCgC-CGCUUUaGGGCuUG---UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 14283 0.66 0.777173
Target:  5'- cAGUGcCGcGUGGAGUUCCGGAUggaGCGGCu -3'
miRNA:   3'- uUCGC-GC-CGCUUUAGGGCUUG---UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 14178 0.66 0.776169
Target:  5'- gGAGUGCGGCaAGccgcuccAUCCgGAacuccACGCGGCa -3'
miRNA:   3'- -UUCGCGCCGcUU-------UAGGgCU-----UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 52006 0.66 0.774156
Target:  5'- ---aGCGGCaucGAUCCCGAagucgugauggacgGCAUGACg -3'
miRNA:   3'- uucgCGCCGcu-UUAGGGCU--------------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 29488 0.66 0.767063
Target:  5'- cGAGCGUcGCGA--UCgCGAGCGCGuCg -3'
miRNA:   3'- -UUCGCGcCGCUuuAGgGCUUGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 8966 0.66 0.767063
Target:  5'- -cGUGCGGUGug--CCCcAAUGCGACg -3'
miRNA:   3'- uuCGCGCCGCuuuaGGGcUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 38739 0.66 0.767063
Target:  5'- cAGCGCuGGCGAcugguUCCCGcuGACuguugugaaaaGCGACg -3'
miRNA:   3'- uUCGCG-CCGCUuu---AGGGC--UUG-----------UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 56957 0.66 0.767063
Target:  5'- -cGCGCgGGCGAGuUCgCGGGCGugguCGGCa -3'
miRNA:   3'- uuCGCG-CCGCUUuAGgGCUUGU----GCUG- -5'
24066 3' -54.6 NC_005262.1 + 45533 0.66 0.767063
Target:  5'- -cGCGcCGGCGAuGGUUCCGAGCcCGcCc -3'
miRNA:   3'- uuCGC-GCCGCU-UUAGGGCUUGuGCuG- -5'
24066 3' -54.6 NC_005262.1 + 62977 0.66 0.756813
Target:  5'- --aCGCGGCucuAUCaggCCGAAUACGACg -3'
miRNA:   3'- uucGCGCCGcuuUAG---GGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 40036 0.66 0.756813
Target:  5'- cGAGCGCaaggagagagGGaGGAAUCCC--GCGCGGCg -3'
miRNA:   3'- -UUCGCG----------CCgCUUUAGGGcuUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 36286 0.66 0.755781
Target:  5'- -cGCGCGGCGA---CgCGAACAccucgguCGACu -3'
miRNA:   3'- uuCGCGCCGCUuuaGgGCUUGU-------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.