miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 34590 0.66 0.74539
Target:  5'- -cGUGCGGCGccguGAUCCacgagauCGAGCgguGCGACu -3'
miRNA:   3'- uuCGCGCCGCu---UUAGG-------GCUUG---UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 45533 0.66 0.767063
Target:  5'- -cGCGcCGGCGAuGGUUCCGAGCcCGcCc -3'
miRNA:   3'- uuCGC-GCCGCU-UUAGGGCUUGuGCuG- -5'
24066 3' -54.6 NC_005262.1 + 22499 0.66 0.787133
Target:  5'- cGAGCagGCGGCGcucGAUCagugCGAACGCGGg -3'
miRNA:   3'- -UUCG--CGCCGCu--UUAGg---GCUUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 51153 0.66 0.74539
Target:  5'- -uGCGCGGCGAGcaCCUGAugGugcccguCGAUg -3'
miRNA:   3'- uuCGCGCCGCUUuaGGGCUugU-------GCUG- -5'
24066 3' -54.6 NC_005262.1 + 35105 0.66 0.787133
Target:  5'- -uGCGUGGCGucgccuUCCCGcuGC-CGACc -3'
miRNA:   3'- uuCGCGCCGCuuu---AGGGCu-UGuGCUG- -5'
24066 3' -54.6 NC_005262.1 + 38739 0.66 0.767063
Target:  5'- cAGCGCuGGCGAcugguUCCCGcuGACuguugugaaaaGCGACg -3'
miRNA:   3'- uUCGCG-CCGCUuu---AGGGC--UUG-----------UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 40036 0.66 0.756813
Target:  5'- cGAGCGCaaggagagagGGaGGAAUCCC--GCGCGGCg -3'
miRNA:   3'- -UUCGCG----------CCgCUUUAGGGcuUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 17337 0.67 0.73594
Target:  5'- cGAGCGCGucGCGGcGAUCCgCGAgaagaucgACGCGAUc -3'
miRNA:   3'- -UUCGCGC--CGCU-UUAGG-GCU--------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 41312 0.67 0.677746
Target:  5'- uGGCGCGGCGcGAUUgCCGAcaucccaacuguuCACGGCc -3'
miRNA:   3'- uUCGCGCCGCuUUAG-GGCUu------------GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 47931 0.67 0.681028
Target:  5'- cGAGCGcCGGCGAcAUCgaagauuuguucaCCGAagGCGCGAa -3'
miRNA:   3'- -UUCGC-GCCGCUuUAG-------------GGCU--UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 42148 0.67 0.682122
Target:  5'- --aCGCGGCGccgggCCCGGuCGCGGCc -3'
miRNA:   3'- uucGCGCCGCuuua-GGGCUuGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 5081 0.67 0.68649
Target:  5'- cGGCGCGuGCGAccggcucggcggugcGcgCCCGGuuCACGAUg -3'
miRNA:   3'- uUCGCGC-CGCU---------------UuaGGGCUu-GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 17072 0.67 0.693026
Target:  5'- cGGCGCcgauaGGCGcg--CCCGucGACGCGGCg -3'
miRNA:   3'- uUCGCG-----CCGCuuuaGGGC--UUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 43915 0.67 0.708191
Target:  5'- cAGCGCGGCGccaaccgcggCCGAcuacaacacgcuGCGCGACg -3'
miRNA:   3'- uUCGCGCCGCuuuag-----GGCU------------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 29516 0.67 0.714647
Target:  5'- aGGGCGuCGGUGccGUCaaGGAUGCGACg -3'
miRNA:   3'- -UUCGC-GCCGCuuUAGggCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 34496 0.67 0.724274
Target:  5'- -cGCGCGGCGGcg-CgCGAcuucugcgagacgACGCGGCu -3'
miRNA:   3'- uuCGCGCCGCUuuaGgGCU-------------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 28867 0.67 0.73594
Target:  5'- cGGCGUcacGGaCGAGAUgCUGGgacGCACGACg -3'
miRNA:   3'- uUCGCG---CC-GCUUUAgGGCU---UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 40113 0.67 0.73594
Target:  5'- -cGCuGCuGCGcuuGAUCCCGAAagUACGACg -3'
miRNA:   3'- uuCG-CGcCGCu--UUAGGGCUU--GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 50012 0.67 0.73594
Target:  5'- -cGCGcCGGCGcccaccgaaguGAAgCCCGAGC-CGGCg -3'
miRNA:   3'- uuCGC-GCCGC-----------UUUaGGGCUUGuGCUG- -5'
24066 3' -54.6 NC_005262.1 + 46721 0.67 0.73594
Target:  5'- cAAGC-CGGCGcAAUCC--GGCACGACc -3'
miRNA:   3'- -UUCGcGCCGCuUUAGGgcUUGUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.