Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24066 | 3' | -54.6 | NC_005262.1 | + | 48409 | 1.08 | 0.001467 |
Target: 5'- gAAGCGCGGCGAAAUCCCGAACACGACg -3' miRNA: 3'- -UUCGCGCCGCUUUAGGGCUUGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 14239 | 0.82 | 0.107513 |
Target: 5'- cGGCGCGGCGGAcaAUCCCGGcGCACGcCa -3' miRNA: 3'- uUCGCGCCGCUU--UAGGGCU-UGUGCuG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 40486 | 0.81 | 0.120364 |
Target: 5'- -cGCGCGGCuGAAUCCgcgCGAACGCGGCa -3' miRNA: 3'- uuCGCGCCGcUUUAGG---GCUUGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 14312 | 0.8 | 0.127312 |
Target: 5'- gGAGgGCGGCGGAAcCgCCGAGCugGGCg -3' miRNA: 3'- -UUCgCGCCGCUUUaG-GGCUUGugCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 38430 | 0.79 | 0.163385 |
Target: 5'- cGGCGCGGuCGAGAUCacgCCGGACgACGGCa -3' miRNA: 3'- uUCGCGCC-GCUUUAG---GGCUUG-UGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 33933 | 0.78 | 0.176842 |
Target: 5'- cGAGCucGCGGCGGgcacgcggcaagcGAUCCCgGAACGCGGCg -3' miRNA: 3'- -UUCG--CGCCGCU-------------UUAGGG-CUUGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 12211 | 0.77 | 0.225626 |
Target: 5'- cAGCGCGGCGAucugCUCGcgcGCACGGCg -3' miRNA: 3'- uUCGCGCCGCUuua-GGGCu--UGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 16125 | 0.76 | 0.237774 |
Target: 5'- cGGUaGCGGCGGuugauGAUCUCGAACACGAUc -3' miRNA: 3'- uUCG-CGCCGCU-----UUAGGGCUUGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 51856 | 0.75 | 0.291897 |
Target: 5'- gAAGCGCGGCGccgcGAAcgaCgCGAGCACGACc -3' miRNA: 3'- -UUCGCGCCGC----UUUa--GgGCUUGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 57001 | 0.75 | 0.270544 |
Target: 5'- cAAGCGCGaCGAGuUCUCGGGCGCGAUc -3' miRNA: 3'- -UUCGCGCcGCUUuAGGGCUUGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 8920 | 0.75 | 0.276815 |
Target: 5'- -uGCGCGGCGAAAagcgCCCGAuuauuugacccucGCGCGGg -3' miRNA: 3'- uuCGCGCCGCUUUa---GGGCU-------------UGUGCUg -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 56825 | 0.74 | 0.322385 |
Target: 5'- cAGCGCGGCGGccAUgUCGAACGcCGACg -3' miRNA: 3'- uUCGCGCCGCUu-UAgGGCUUGU-GCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 5710 | 0.74 | 0.306852 |
Target: 5'- -uGCGCaacucgGGCGAGGUCgCGAACAuCGACg -3' miRNA: 3'- uuCGCG------CCGCUUUAGgGCUUGU-GCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 10917 | 0.74 | 0.337679 |
Target: 5'- uGAGCGCGGCGGAcgcgcaugcgcugGUCgUGAucguCGCGGCa -3' miRNA: 3'- -UUCGCGCCGCUU-------------UAGgGCUu---GUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 24957 | 0.73 | 0.381294 |
Target: 5'- -cGCGcCGGCGGAugcacAUCgCCGAGCACuGGCg -3' miRNA: 3'- uuCGC-GCCGCUU-----UAG-GGCUUGUG-CUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 28384 | 0.73 | 0.381294 |
Target: 5'- --cCGCGGCGAAGUguucgaCCCGAACgacgaGCGGCa -3' miRNA: 3'- uucGCGCCGCUUUA------GGGCUUG-----UGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 16602 | 0.72 | 0.437195 |
Target: 5'- cGAG-GCGGCGAAgcagccgcGUUUCGAGCugGGCg -3' miRNA: 3'- -UUCgCGCCGCUU--------UAGGGCUUGugCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 20839 | 0.72 | 0.418035 |
Target: 5'- gGGGCGCGGCa----CCCGcucuACACGACg -3' miRNA: 3'- -UUCGCGCCGcuuuaGGGCu---UGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 51714 | 0.72 | 0.407717 |
Target: 5'- -uGCGCGGCGAGAUcaaaaagCCgGAGCugauCGACc -3' miRNA: 3'- uuCGCGCCGCUUUA-------GGgCUUGu---GCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 47379 | 0.72 | 0.399394 |
Target: 5'- aGGGCGCcaagcacgagGGCGAc--CUCGAGCGCGACg -3' miRNA: 3'- -UUCGCG----------CCGCUuuaGGGCUUGUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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