miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 48409 1.08 0.001467
Target:  5'- gAAGCGCGGCGAAAUCCCGAACACGACg -3'
miRNA:   3'- -UUCGCGCCGCUUUAGGGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 14239 0.82 0.107513
Target:  5'- cGGCGCGGCGGAcaAUCCCGGcGCACGcCa -3'
miRNA:   3'- uUCGCGCCGCUU--UAGGGCU-UGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 40486 0.81 0.120364
Target:  5'- -cGCGCGGCuGAAUCCgcgCGAACGCGGCa -3'
miRNA:   3'- uuCGCGCCGcUUUAGG---GCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 14312 0.8 0.127312
Target:  5'- gGAGgGCGGCGGAAcCgCCGAGCugGGCg -3'
miRNA:   3'- -UUCgCGCCGCUUUaG-GGCUUGugCUG- -5'
24066 3' -54.6 NC_005262.1 + 38430 0.79 0.163385
Target:  5'- cGGCGCGGuCGAGAUCacgCCGGACgACGGCa -3'
miRNA:   3'- uUCGCGCC-GCUUUAG---GGCUUG-UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 33933 0.78 0.176842
Target:  5'- cGAGCucGCGGCGGgcacgcggcaagcGAUCCCgGAACGCGGCg -3'
miRNA:   3'- -UUCG--CGCCGCU-------------UUAGGG-CUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 12211 0.77 0.225626
Target:  5'- cAGCGCGGCGAucugCUCGcgcGCACGGCg -3'
miRNA:   3'- uUCGCGCCGCUuua-GGGCu--UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 16125 0.76 0.237774
Target:  5'- cGGUaGCGGCGGuugauGAUCUCGAACACGAUc -3'
miRNA:   3'- uUCG-CGCCGCU-----UUAGGGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 57001 0.75 0.270544
Target:  5'- cAAGCGCGaCGAGuUCUCGGGCGCGAUc -3'
miRNA:   3'- -UUCGCGCcGCUUuAGGGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 8920 0.75 0.276815
Target:  5'- -uGCGCGGCGAAAagcgCCCGAuuauuugacccucGCGCGGg -3'
miRNA:   3'- uuCGCGCCGCUUUa---GGGCU-------------UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 51856 0.75 0.291897
Target:  5'- gAAGCGCGGCGccgcGAAcgaCgCGAGCACGACc -3'
miRNA:   3'- -UUCGCGCCGC----UUUa--GgGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 5710 0.74 0.306852
Target:  5'- -uGCGCaacucgGGCGAGGUCgCGAACAuCGACg -3'
miRNA:   3'- uuCGCG------CCGCUUUAGgGCUUGU-GCUG- -5'
24066 3' -54.6 NC_005262.1 + 56825 0.74 0.322385
Target:  5'- cAGCGCGGCGGccAUgUCGAACGcCGACg -3'
miRNA:   3'- uUCGCGCCGCUu-UAgGGCUUGU-GCUG- -5'
24066 3' -54.6 NC_005262.1 + 10917 0.74 0.337679
Target:  5'- uGAGCGCGGCGGAcgcgcaugcgcugGUCgUGAucguCGCGGCa -3'
miRNA:   3'- -UUCGCGCCGCUU-------------UAGgGCUu---GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 28384 0.73 0.381294
Target:  5'- --cCGCGGCGAAGUguucgaCCCGAACgacgaGCGGCa -3'
miRNA:   3'- uucGCGCCGCUUUA------GGGCUUG-----UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 24957 0.73 0.381294
Target:  5'- -cGCGcCGGCGGAugcacAUCgCCGAGCACuGGCg -3'
miRNA:   3'- uuCGC-GCCGCUU-----UAG-GGCUUGUG-CUG- -5'
24066 3' -54.6 NC_005262.1 + 47379 0.72 0.399394
Target:  5'- aGGGCGCcaagcacgagGGCGAc--CUCGAGCGCGACg -3'
miRNA:   3'- -UUCGCG----------CCGCUuuaGGGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 51714 0.72 0.407717
Target:  5'- -uGCGCGGCGAGAUcaaaaagCCgGAGCugauCGACc -3'
miRNA:   3'- uuCGCGCCGCUUUA-------GGgCUUGu---GCUG- -5'
24066 3' -54.6 NC_005262.1 + 20839 0.72 0.418035
Target:  5'- gGGGCGCGGCa----CCCGcucuACACGACg -3'
miRNA:   3'- -UUCGCGCCGcuuuaGGGCu---UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 16602 0.72 0.437195
Target:  5'- cGAG-GCGGCGAAgcagccgcGUUUCGAGCugGGCg -3'
miRNA:   3'- -UUCgCGCCGCUU--------UAGGGCUUGugCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.