miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 16602 0.72 0.437195
Target:  5'- cGAG-GCGGCGAAgcagccgcGUUUCGAGCugGGCg -3'
miRNA:   3'- -UUCgCGCCGCUU--------UAGGGCUUGugCUG- -5'
24066 3' -54.6 NC_005262.1 + 15476 0.71 0.446962
Target:  5'- gAAGCaCGGCGcuuacaCCGAGCGCGGCg -3'
miRNA:   3'- -UUCGcGCCGCuuuag-GGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 19151 0.71 0.45685
Target:  5'- gGAGCGCGGCGgcGUCaaGGGCcucgcaauCGACa -3'
miRNA:   3'- -UUCGCGCCGCuuUAGggCUUGu-------GCUG- -5'
24066 3' -54.6 NC_005262.1 + 54510 0.71 0.466854
Target:  5'- -cGCGCGGCGGccugcgccUCCgCGAgcuugcGCACGACg -3'
miRNA:   3'- uuCGCGCCGCUuu------AGG-GCU------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 2739 0.71 0.466854
Target:  5'- -uGCGCcuCGAGGUCCCGGaugcgcuucaGCACGGCg -3'
miRNA:   3'- uuCGCGccGCUUUAGGGCU----------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 5641 0.71 0.47697
Target:  5'- -uGCGUGGUGAcGAUCCgcgcauCGAGCACGAg -3'
miRNA:   3'- uuCGCGCCGCU-UUAGG------GCUUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 50403 0.71 0.47697
Target:  5'- -cGCGCGGCGAucagcgCCgCGgAGCGCGAg -3'
miRNA:   3'- uuCGCGCCGCUuua---GG-GC-UUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 11521 0.71 0.491311
Target:  5'- cGGGCGCGGCGu-GUCgCGcaccuucggcggcccGGCGCGGCg -3'
miRNA:   3'- -UUCGCGCCGCuuUAGgGC---------------UUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 12553 0.71 0.497518
Target:  5'- -cGCGCGGCGc---CCCGugaGCGACg -3'
miRNA:   3'- uuCGCGCCGCuuuaGGGCuugUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 36734 0.7 0.507941
Target:  5'- uGGCGCcgcgGGCGcAGUUCUGcGCACGACg -3'
miRNA:   3'- uUCGCG----CCGCuUUAGGGCuUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 61806 0.7 0.512135
Target:  5'- -uGCGCGGCGcaugccucggcgcucGAGUaCCCGAACAgguuUGACu -3'
miRNA:   3'- uuCGCGCCGC---------------UUUA-GGGCUUGU----GCUG- -5'
24066 3' -54.6 NC_005262.1 + 17122 0.7 0.518454
Target:  5'- -cGCGCGGCGAuggaCCacaaGAACGCGcGCg -3'
miRNA:   3'- uuCGCGCCGCUuua-GGg---CUUGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 53450 0.7 0.518454
Target:  5'- gAAGCGCGGCGccggcGUCgaGGACaACGGCg -3'
miRNA:   3'- -UUCGCGCCGCuu---UAGggCUUG-UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 59224 0.7 0.52799
Target:  5'- -cGCGCGGCGAcgcggCCCGGccgguucgccucgGCGCGGu -3'
miRNA:   3'- uuCGCGCCGCUuua--GGGCU-------------UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 14649 0.7 0.529054
Target:  5'- uGAGCgccGCGGCGAGAcgccUgCCGAuccagcgcauGCACGGCa -3'
miRNA:   3'- -UUCG---CGCCGCUUU----AgGGCU----------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 36827 0.7 0.539732
Target:  5'- uGGCGCGGUugcGAcguauGGUgCCGAcgACACGACg -3'
miRNA:   3'- uUCGCGCCG---CU-----UUAgGGCU--UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 51427 0.7 0.539732
Target:  5'- cGGCGCGcGCGAGGgcgauaCCGu-CACGACg -3'
miRNA:   3'- uUCGCGC-CGCUUUag----GGCuuGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 44685 0.7 0.550481
Target:  5'- -cGCGCucgaGCGGAAUCUCGAACccuuCGACc -3'
miRNA:   3'- uuCGCGc---CGCUUUAGGGCUUGu---GCUG- -5'
24066 3' -54.6 NC_005262.1 + 17558 0.7 0.5548
Target:  5'- -cGCGCuucguccuggaacucGGCGAAGUCCuCGAACGUGAUc -3'
miRNA:   3'- uuCGCG---------------CCGCUUUAGG-GCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 10255 0.69 0.561296
Target:  5'- aAGGCgaGCGGCGAcAUCaaGGAgGCGACu -3'
miRNA:   3'- -UUCG--CGCCGCUuUAGggCUUgUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.