Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24066 | 3' | -54.6 | NC_005262.1 | + | 35105 | 0.66 | 0.787133 |
Target: 5'- -uGCGUGGCGucgccuUCCCGcuGC-CGACc -3' miRNA: 3'- uuCGCGCCGCuuu---AGGGCu-UGuGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 53641 | 0.66 | 0.787133 |
Target: 5'- -uGCGCGcCGAGcaccAUCUCGGgguACGCGGCg -3' miRNA: 3'- uuCGCGCcGCUU----UAGGGCU---UGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 22499 | 0.66 | 0.787133 |
Target: 5'- cGAGCagGCGGCGcucGAUCagugCGAACGCGGg -3' miRNA: 3'- -UUCG--CGCCGCu--UUAGg---GCUUGUGCUg -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 26920 | 0.66 | 0.787133 |
Target: 5'- -cGCGCGaCGA--UCCCGAGC-CGGa -3' miRNA: 3'- uuCGCGCcGCUuuAGGGCUUGuGCUg -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 8121 | 0.66 | 0.787133 |
Target: 5'- -cGCGCuGCGucAGUCCUG-ACGCGAg -3' miRNA: 3'- uuCGCGcCGCu-UUAGGGCuUGUGCUg -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 46174 | 0.66 | 0.777173 |
Target: 5'- cGGCGCGGCc--GUCCUcccaauaugcgGAGCACGuCa -3' miRNA: 3'- uUCGCGCCGcuuUAGGG-----------CUUGUGCuG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 60483 | 0.66 | 0.777173 |
Target: 5'- -uGCGCgaucagGGCGAGAcgCCgGGccGCGCGGCg -3' miRNA: 3'- uuCGCG------CCGCUUUa-GGgCU--UGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 21426 | 0.66 | 0.777173 |
Target: 5'- -cGCGaCGGcCGAcGUCCgCGAGCugGuCg -3' miRNA: 3'- uuCGC-GCC-GCUuUAGG-GCUUGugCuG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 9435 | 0.66 | 0.777173 |
Target: 5'- cGAGCGgGuGCGAAG-CCCGcAUuguGCGGCa -3' miRNA: 3'- -UUCGCgC-CGCUUUaGGGCuUG---UGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 14283 | 0.66 | 0.777173 |
Target: 5'- cAGUGcCGcGUGGAGUUCCGGAUggaGCGGCu -3' miRNA: 3'- uUCGC-GC-CGCUUUAGGGCUUG---UGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 14178 | 0.66 | 0.776169 |
Target: 5'- gGAGUGCGGCaAGccgcuccAUCCgGAacuccACGCGGCa -3' miRNA: 3'- -UUCGCGCCGcUU-------UAGGgCU-----UGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 52006 | 0.66 | 0.774156 |
Target: 5'- ---aGCGGCaucGAUCCCGAagucgugauggacgGCAUGACg -3' miRNA: 3'- uucgCGCCGcu-UUAGGGCU--------------UGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 29488 | 0.66 | 0.767063 |
Target: 5'- cGAGCGUcGCGA--UCgCGAGCGCGuCg -3' miRNA: 3'- -UUCGCGcCGCUuuAGgGCUUGUGCuG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 8966 | 0.66 | 0.767063 |
Target: 5'- -cGUGCGGUGug--CCCcAAUGCGACg -3' miRNA: 3'- uuCGCGCCGCuuuaGGGcUUGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 38739 | 0.66 | 0.767063 |
Target: 5'- cAGCGCuGGCGAcugguUCCCGcuGACuguugugaaaaGCGACg -3' miRNA: 3'- uUCGCG-CCGCUuu---AGGGC--UUG-----------UGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 56957 | 0.66 | 0.767063 |
Target: 5'- -cGCGCgGGCGAGuUCgCGGGCGugguCGGCa -3' miRNA: 3'- uuCGCG-CCGCUUuAGgGCUUGU----GCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 45533 | 0.66 | 0.767063 |
Target: 5'- -cGCGcCGGCGAuGGUUCCGAGCcCGcCc -3' miRNA: 3'- uuCGC-GCCGCU-UUAGGGCUUGuGCuG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 62977 | 0.66 | 0.756813 |
Target: 5'- --aCGCGGCucuAUCaggCCGAAUACGACg -3' miRNA: 3'- uucGCGCCGcuuUAG---GGCUUGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 40036 | 0.66 | 0.756813 |
Target: 5'- cGAGCGCaaggagagagGGaGGAAUCCC--GCGCGGCg -3' miRNA: 3'- -UUCGCG----------CCgCUUUAGGGcuUGUGCUG- -5' |
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24066 | 3' | -54.6 | NC_005262.1 | + | 36286 | 0.66 | 0.755781 |
Target: 5'- -cGCGCGGCGA---CgCGAACAccucgguCGACu -3' miRNA: 3'- uuCGCGCCGCUuuaGgGCUUGU-------GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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