miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 47653 0.66 0.746435
Target:  5'- gAAGCGCgaGGCGA----UCGAGCAgGACa -3'
miRNA:   3'- -UUCGCG--CCGCUuuagGGCUUGUgCUG- -5'
24066 3' -54.6 NC_005262.1 + 44155 0.66 0.746435
Target:  5'- -cGCGCGcGCGAucgggCagGAGCGCGGCg -3'
miRNA:   3'- uuCGCGC-CGCUuua--GggCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 29774 0.66 0.746435
Target:  5'- -cGCcCGGCGuAGUgCCGGacgGCGCGGCa -3'
miRNA:   3'- uuCGcGCCGCuUUAgGGCU---UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 16067 0.66 0.746435
Target:  5'- --uUGCGGcCGAcGAUCCUGAugACGAa -3'
miRNA:   3'- uucGCGCC-GCU-UUAGGGCUugUGCUg -5'
24066 3' -54.6 NC_005262.1 + 6348 0.66 0.746435
Target:  5'- uAGuCGCGGCaGAG-CUCGAACACGcGCg -3'
miRNA:   3'- uUC-GCGCCGcUUUaGGGCUUGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 51153 0.66 0.74539
Target:  5'- -uGCGCGGCGAGcaCCUGAugGugcccguCGAUg -3'
miRNA:   3'- uuCGCGCCGCUUuaGGGCUugU-------GCUG- -5'
24066 3' -54.6 NC_005262.1 + 34590 0.66 0.74539
Target:  5'- -cGUGCGGCGccguGAUCCacgagauCGAGCgguGCGACu -3'
miRNA:   3'- uuCGCGCCGCu---UUAGG-------GCUUG---UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 17337 0.67 0.73594
Target:  5'- cGAGCGCGucGCGGcGAUCCgCGAgaagaucgACGCGAUc -3'
miRNA:   3'- -UUCGCGC--CGCU-UUAGG-GCU--------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 45175 0.67 0.73594
Target:  5'- uGAGCGCGGUcaacguGUCCUGcGCGCG-Cg -3'
miRNA:   3'- -UUCGCGCCGcuu---UAGGGCuUGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 28511 0.67 0.73594
Target:  5'- cGGCGCGGCccGAUucgacCUCGAGCACGuGCc -3'
miRNA:   3'- uUCGCGCCGcuUUA-----GGGCUUGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 28867 0.67 0.73594
Target:  5'- cGGCGUcacGGaCGAGAUgCUGGgacGCACGACg -3'
miRNA:   3'- uUCGCG---CC-GCUUUAgGGCU---UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 50012 0.67 0.73594
Target:  5'- -cGCGcCGGCGcccaccgaaguGAAgCCCGAGC-CGGCg -3'
miRNA:   3'- uuCGC-GCCGC-----------UUUaGGGCUUGuGCUG- -5'
24066 3' -54.6 NC_005262.1 + 40113 0.67 0.73594
Target:  5'- -cGCuGCuGCGcuuGAUCCCGAAagUACGACg -3'
miRNA:   3'- uuCG-CGcCGCu--UUAGGGCUU--GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 46721 0.67 0.73594
Target:  5'- cAAGC-CGGCGcAAUCC--GGCACGACc -3'
miRNA:   3'- -UUCGcGCCGCuUUAGGgcUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 62794 0.67 0.73594
Target:  5'- -cGCGCcgaaaGCgGAAAUCCCGAcgaaGgGCGACg -3'
miRNA:   3'- uuCGCGc----CG-CUUUAGGGCU----UgUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 28642 0.67 0.72534
Target:  5'- -cGCGCGGCGGAAgcCCCaGAUA-GGCg -3'
miRNA:   3'- uuCGCGCCGCUUUa-GGGcUUGUgCUG- -5'
24066 3' -54.6 NC_005262.1 + 34496 0.67 0.724274
Target:  5'- -cGCGCGGCGGcg-CgCGAcuucugcgagacgACGCGGCu -3'
miRNA:   3'- uuCGCGCCGCUuuaGgGCU-------------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 6247 0.67 0.724274
Target:  5'- gGAGCGCGuGaCGAucucgaucagcaaAAUCCCGGcCGCGcACa -3'
miRNA:   3'- -UUCGCGC-C-GCU-------------UUAGGGCUuGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 50407 0.67 0.718934
Target:  5'- -uGCGCGGCGGGcgCUgCGGccggcuccucaauccGCGCGGCc -3'
miRNA:   3'- uuCGCGCCGCUUuaGG-GCU---------------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 29516 0.67 0.714647
Target:  5'- aGGGCGuCGGUGccGUCaaGGAUGCGACg -3'
miRNA:   3'- -UUCGC-GCCGCuuUAGggCUUGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.