miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 29516 0.67 0.714647
Target:  5'- aGGGCGuCGGUGccGUCaaGGAUGCGACg -3'
miRNA:   3'- -UUCGC-GCCGCuuUAGggCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 20608 0.67 0.714647
Target:  5'- cGAGUGgGGUGAGgucGUCgCGAGCGCcGCg -3'
miRNA:   3'- -UUCGCgCCGCUU---UAGgGCUUGUGcUG- -5'
24066 3' -54.6 NC_005262.1 + 39523 0.67 0.714647
Target:  5'- -uGCGUGGCGAgguAAUCCgaGAGCA-GGCc -3'
miRNA:   3'- uuCGCGCCGCU---UUAGGg-CUUGUgCUG- -5'
24066 3' -54.6 NC_005262.1 + 44227 0.67 0.714647
Target:  5'- -cGCGCGcGCGuccggCCgGAACGCGGg -3'
miRNA:   3'- uuCGCGC-CGCuuua-GGgCUUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 57263 0.67 0.713573
Target:  5'- gGAGCgacacgaGCGGCGAGggGUCgCCGGggaugucgaccgACACGGCc -3'
miRNA:   3'- -UUCG-------CGCCGCUU--UAG-GGCU------------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 43915 0.67 0.708191
Target:  5'- cAGCGCGGCGccaaccgcggCCGAcuacaacacgcuGCGCGACg -3'
miRNA:   3'- uUCGCGCCGCuuuag-----GGCU------------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 52121 0.67 0.703872
Target:  5'- uAGGCGcCGGCGAucgucAUgCCGuccauCACGACu -3'
miRNA:   3'- -UUCGC-GCCGCUu----UAgGGCuu---GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 11070 0.67 0.703872
Target:  5'- cGAGCGCgaccGGCGu--UCCCGGcgcgccgaacaGCGCGAa -3'
miRNA:   3'- -UUCGCG----CCGCuuuAGGGCU-----------UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 22306 0.67 0.703872
Target:  5'- cGGCGCGGCcguGAGcuUgUCGAGCGCGAg -3'
miRNA:   3'- uUCGCGCCG---CUUu-AgGGCUUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 162 0.67 0.693026
Target:  5'- cGGCGCGGcCGAcuucuUCgCGAGcCGCGGCc -3'
miRNA:   3'- uUCGCGCC-GCUuu---AGgGCUU-GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 11769 0.67 0.693026
Target:  5'- uGGCGCGGCccGA-CCUGGGCGCG-Cu -3'
miRNA:   3'- uUCGCGCCGcuUUaGGGCUUGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 17072 0.67 0.693026
Target:  5'- cGGCGCcgauaGGCGcg--CCCGucGACGCGGCg -3'
miRNA:   3'- uUCGCG-----CCGCuuuaGGGC--UUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 5081 0.67 0.68649
Target:  5'- cGGCGCGuGCGAccggcucggcggugcGcgCCCGGuuCACGAUg -3'
miRNA:   3'- uUCGCGC-CGCU---------------UuaGGGCUu-GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 42148 0.67 0.682122
Target:  5'- --aCGCGGCGccgggCCCGGuCGCGGCc -3'
miRNA:   3'- uucGCGCCGCuuua-GGGCUuGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 53992 0.67 0.682122
Target:  5'- cAGCGCGucGCGcAGA-CCCGucCACGACu -3'
miRNA:   3'- uUCGCGC--CGC-UUUaGGGCuuGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 47931 0.67 0.681028
Target:  5'- cGAGCGcCGGCGAcAUCgaagauuuguucaCCGAagGCGCGAa -3'
miRNA:   3'- -UUCGC-GCCGCUuUAG-------------GGCU--UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 41312 0.67 0.677746
Target:  5'- uGGCGCGGCGcGAUUgCCGAcaucccaacuguuCACGGCc -3'
miRNA:   3'- uUCGCGCCGCuUUAG-GGCUu------------GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 33574 0.68 0.67117
Target:  5'- cGAGCGUcaGGCccGAAUCCuCGAACGCGcGCa -3'
miRNA:   3'- -UUCGCG--CCGc-UUUAGG-GCUUGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 43848 0.68 0.67117
Target:  5'- -cGCGCGGCGGug-CgCCGGcaggaccucgGCGCGAUc -3'
miRNA:   3'- uuCGCGCCGCUuuaG-GGCU----------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 49836 0.68 0.67117
Target:  5'- gGAGCGC-GCGAAuggCCCGGuGCcgGCGGCg -3'
miRNA:   3'- -UUCGCGcCGCUUua-GGGCU-UG--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.