miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 162 0.67 0.693026
Target:  5'- cGGCGCGGcCGAcuucuUCgCGAGcCGCGGCc -3'
miRNA:   3'- uUCGCGCC-GCUuu---AGgGCUU-GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 1273 0.72 0.437195
Target:  5'- -cGCGCGGCGAA--CUCGcACugGGCu -3'
miRNA:   3'- uuCGCGCCGCUUuaGGGCuUGugCUG- -5'
24066 3' -54.6 NC_005262.1 + 2739 0.71 0.466854
Target:  5'- -uGCGCcuCGAGGUCCCGGaugcgcuucaGCACGGCg -3'
miRNA:   3'- uuCGCGccGCUUUAGGGCU----------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 4456 0.68 0.66018
Target:  5'- cAGCGCGGUGAGcuuUCaggggcuuaCGAuCGCGACg -3'
miRNA:   3'- uUCGCGCCGCUUu--AGg--------GCUuGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 4559 0.69 0.594051
Target:  5'- -cGCGCGGCGc-AUCUCGcGCcaGCGGCg -3'
miRNA:   3'- uuCGCGCCGCuuUAGGGCuUG--UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 5081 0.67 0.68649
Target:  5'- cGGCGCGuGCGAccggcucggcggugcGcgCCCGGuuCACGAUg -3'
miRNA:   3'- uUCGCGC-CGCU---------------UuaGGGCUu-GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 5641 0.71 0.47697
Target:  5'- -uGCGUGGUGAcGAUCCgcgcauCGAGCACGAg -3'
miRNA:   3'- uuCGCGCCGCU-UUAGG------GCUUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 5710 0.74 0.306852
Target:  5'- -uGCGCaacucgGGCGAGGUCgCGAACAuCGACg -3'
miRNA:   3'- uuCGCG------CCGCUUUAGgGCUUGU-GCUG- -5'
24066 3' -54.6 NC_005262.1 + 6247 0.67 0.724274
Target:  5'- gGAGCGCGuGaCGAucucgaucagcaaAAUCCCGGcCGCGcACa -3'
miRNA:   3'- -UUCGCGC-C-GCU-------------UUAGGGCUuGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 6348 0.66 0.746435
Target:  5'- uAGuCGCGGCaGAG-CUCGAACACGcGCg -3'
miRNA:   3'- uUC-GCGCCGcUUUaGGGCUUGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 6390 0.68 0.649165
Target:  5'- gAGGCGgcCGGCGAGcgCaaGAAgGCGGCg -3'
miRNA:   3'- -UUCGC--GCCGCUUuaGggCUUgUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 7012 0.68 0.631512
Target:  5'- cAGCGCGGCGGcuucgguggacgucaGGUCCUucGCGCG-Ca -3'
miRNA:   3'- uUCGCGCCGCU---------------UUAGGGcuUGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 8121 0.66 0.787133
Target:  5'- -cGCGCuGCGucAGUCCUG-ACGCGAg -3'
miRNA:   3'- uuCGCGcCGCu-UUAGGGCuUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 8920 0.75 0.276815
Target:  5'- -uGCGCGGCGAAAagcgCCCGAuuauuugacccucGCGCGGg -3'
miRNA:   3'- uuCGCGCCGCUUUa---GGGCU-------------UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 8966 0.66 0.767063
Target:  5'- -cGUGCGGUGug--CCCcAAUGCGACg -3'
miRNA:   3'- uuCGCGCCGCuuuaGGGcUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 9435 0.66 0.777173
Target:  5'- cGAGCGgGuGCGAAG-CCCGcAUuguGCGGCa -3'
miRNA:   3'- -UUCGCgC-CGCUUUaGGGCuUG---UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 10255 0.69 0.561296
Target:  5'- aAGGCgaGCGGCGAcAUCaaGGAgGCGACu -3'
miRNA:   3'- -UUCG--CGCCGCUuUAGggCUUgUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 10917 0.74 0.337679
Target:  5'- uGAGCGCGGCGGAcgcgcaugcgcugGUCgUGAucguCGCGGCa -3'
miRNA:   3'- -UUCGCGCCGCUU-------------UAGgGCUu---GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 11070 0.67 0.703872
Target:  5'- cGAGCGCgaccGGCGu--UCCCGGcgcgccgaacaGCGCGAa -3'
miRNA:   3'- -UUCGCG----CCGCuuuAGGGCU-----------UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 11521 0.71 0.491311
Target:  5'- cGGGCGCGGCGu-GUCgCGcaccuucggcggcccGGCGCGGCg -3'
miRNA:   3'- -UUCGCGCCGCuuUAGgGC---------------UUGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.