miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 11769 0.67 0.693026
Target:  5'- uGGCGCGGCccGA-CCUGGGCGCG-Cu -3'
miRNA:   3'- uUCGCGCCGcuUUaGGGCUUGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 12211 0.77 0.225626
Target:  5'- cAGCGCGGCGAucugCUCGcgcGCACGGCg -3'
miRNA:   3'- uUCGCGCCGCUuua-GGGCu--UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 12553 0.71 0.497518
Target:  5'- -cGCGCGGCGc---CCCGugaGCGACg -3'
miRNA:   3'- uuCGCGCCGCuuuaGGGCuugUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 13306 0.69 0.616064
Target:  5'- gGAGCGuUGGCGGAcgCgCCGGuuGCGCGcACg -3'
miRNA:   3'- -UUCGC-GCCGCUUuaG-GGCU--UGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 14178 0.66 0.776169
Target:  5'- gGAGUGCGGCaAGccgcuccAUCCgGAacuccACGCGGCa -3'
miRNA:   3'- -UUCGCGCCGcUU-------UAGGgCU-----UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 14239 0.82 0.107513
Target:  5'- cGGCGCGGCGGAcaAUCCCGGcGCACGcCa -3'
miRNA:   3'- uUCGCGCCGCUU--UAGGGCU-UGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 14283 0.66 0.777173
Target:  5'- cAGUGcCGcGUGGAGUUCCGGAUggaGCGGCu -3'
miRNA:   3'- uUCGC-GC-CGCUUUAGGGCUUG---UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 14312 0.8 0.127312
Target:  5'- gGAGgGCGGCGGAAcCgCCGAGCugGGCg -3'
miRNA:   3'- -UUCgCGCCGCUUUaG-GGCUUGugCUG- -5'
24066 3' -54.6 NC_005262.1 + 14649 0.7 0.529054
Target:  5'- uGAGCgccGCGGCGAGAcgccUgCCGAuccagcgcauGCACGGCa -3'
miRNA:   3'- -UUCG---CGCCGCUUU----AgGGCU----------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 15476 0.71 0.446962
Target:  5'- gAAGCaCGGCGcuuacaCCGAGCGCGGCg -3'
miRNA:   3'- -UUCGcGCCGCuuuag-GGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 16067 0.66 0.746435
Target:  5'- --uUGCGGcCGAcGAUCCUGAugACGAa -3'
miRNA:   3'- uucGCGCC-GCU-UUAGGGCUugUGCUg -5'
24066 3' -54.6 NC_005262.1 + 16125 0.76 0.237774
Target:  5'- cGGUaGCGGCGGuugauGAUCUCGAACACGAUc -3'
miRNA:   3'- uUCG-CGCCGCU-----UUAGGGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 16495 0.68 0.627097
Target:  5'- --uCGCGGCGcaGAAUCCCGGcgGC-CGGCc -3'
miRNA:   3'- uucGCGCCGC--UUUAGGGCU--UGuGCUG- -5'
24066 3' -54.6 NC_005262.1 + 16602 0.72 0.437195
Target:  5'- cGAG-GCGGCGAAgcagccgcGUUUCGAGCugGGCg -3'
miRNA:   3'- -UUCgCGCCGCUU--------UAGGGCUUGugCUG- -5'
24066 3' -54.6 NC_005262.1 + 16975 0.69 0.572168
Target:  5'- cGGUGCGGUGuggugcggCCCGGcGCGCGGCc -3'
miRNA:   3'- uUCGCGCCGCuuua----GGGCU-UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 17072 0.67 0.693026
Target:  5'- cGGCGCcgauaGGCGcg--CCCGucGACGCGGCg -3'
miRNA:   3'- uUCGCG-----CCGCuuuaGGGC--UUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 17122 0.7 0.518454
Target:  5'- -cGCGCGGCGAuggaCCacaaGAACGCGcGCg -3'
miRNA:   3'- uuCGCGCCGCUuua-GGg---CUUGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 17337 0.67 0.73594
Target:  5'- cGAGCGCGucGCGGcGAUCCgCGAgaagaucgACGCGAUc -3'
miRNA:   3'- -UUCGCGC--CGCU-UUAGG-GCU--------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 17558 0.7 0.5548
Target:  5'- -cGCGCuucguccuggaacucGGCGAAGUCCuCGAACGUGAUc -3'
miRNA:   3'- uuCGCG---------------CCGCUUUAGG-GCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 19151 0.71 0.45685
Target:  5'- gGAGCGCGGCGgcGUCaaGGGCcucgcaauCGACa -3'
miRNA:   3'- -UUCGCGCCGCuuUAGggCUUGu-------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.