miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 62977 0.66 0.756813
Target:  5'- --aCGCGGCucuAUCaggCCGAAUACGACg -3'
miRNA:   3'- uucGCGCCGcuuUAG---GGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 62794 0.67 0.73594
Target:  5'- -cGCGCcgaaaGCgGAAAUCCCGAcgaaGgGCGACg -3'
miRNA:   3'- uuCGCGc----CG-CUUUAGGGCU----UgUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 61806 0.7 0.512135
Target:  5'- -uGCGCGGCGcaugccucggcgcucGAGUaCCCGAACAgguuUGACu -3'
miRNA:   3'- uuCGCGCCGC---------------UUUA-GGGCUUGU----GCUG- -5'
24066 3' -54.6 NC_005262.1 + 60850 0.67 0.714647
Target:  5'- cGGCGUGGCGAugg-CCGAggcaaugcGCGCGAa -3'
miRNA:   3'- uUCGCGCCGCUuuagGGCU--------UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 60577 0.69 0.616064
Target:  5'- cGGCGCGGUcuaccuguUCCUGAACcCGGCg -3'
miRNA:   3'- uUCGCGCCGcuuu----AGGGCUUGuGCUG- -5'
24066 3' -54.6 NC_005262.1 + 60483 0.66 0.777173
Target:  5'- -uGCGCgaucagGGCGAGAcgCCgGGccGCGCGGCg -3'
miRNA:   3'- uuCGCG------CCGCUUUa-GGgCU--UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 60414 0.68 0.638133
Target:  5'- uGGCGCacguGGuCGAGAUCgCGAACcaaGCGACc -3'
miRNA:   3'- uUCGCG----CC-GCUUUAGgGCUUG---UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 59512 0.69 0.614962
Target:  5'- aGGGCGaCGGCGAGuauggCCCGAaggucaaGCGCG-Ca -3'
miRNA:   3'- -UUCGC-GCCGCUUua---GGGCU-------UGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 59224 0.7 0.52799
Target:  5'- -cGCGCGGCGAcgcggCCCGGccgguucgccucgGCGCGGu -3'
miRNA:   3'- uuCGCGCCGCUuua--GGGCU-------------UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 57606 0.68 0.67117
Target:  5'- --uCGCGGuCGAug-CCCG-GCGCGACg -3'
miRNA:   3'- uucGCGCC-GCUuuaGGGCuUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 57263 0.67 0.713573
Target:  5'- gGAGCgacacgaGCGGCGAGggGUCgCCGGggaugucgaccgACACGGCc -3'
miRNA:   3'- -UUCG-------CGCCGCUU--UAG-GGCU------------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 57082 0.69 0.605046
Target:  5'- cGGCGagauCGGCGGcuUCCCGAucauguucCACGGCa -3'
miRNA:   3'- uUCGC----GCCGCUuuAGGGCUu-------GUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 57025 0.69 0.561296
Target:  5'- -cGCGCggaucGGCGugcgcuUCUCGAGCGCGGCc -3'
miRNA:   3'- uuCGCG-----CCGCuuu---AGGGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 57001 0.75 0.270544
Target:  5'- cAAGCGCGaCGAGuUCUCGGGCGCGAUc -3'
miRNA:   3'- -UUCGCGCcGCUUuAGGGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 56957 0.66 0.767063
Target:  5'- -cGCGCgGGCGAGuUCgCGGGCGugguCGGCa -3'
miRNA:   3'- uuCGCG-CCGCUUuAGgGCUUGU----GCUG- -5'
24066 3' -54.6 NC_005262.1 + 56825 0.74 0.322385
Target:  5'- cAGCGCGGCGGccAUgUCGAACGcCGACg -3'
miRNA:   3'- uUCGCGCCGCUu-UAgGGCUUGU-GCUG- -5'
24066 3' -54.6 NC_005262.1 + 56348 0.68 0.649165
Target:  5'- cGAGgGCGGCGugccccgcgagcAGAUCgCGuucauGCGCGACa -3'
miRNA:   3'- -UUCgCGCCGC------------UUUAGgGCu----UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 54510 0.71 0.466854
Target:  5'- -cGCGCGGCGGccugcgccUCCgCGAgcuugcGCACGACg -3'
miRNA:   3'- uuCGCGCCGCUuu------AGG-GCU------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 53992 0.67 0.682122
Target:  5'- cAGCGCGucGCGcAGA-CCCGucCACGACu -3'
miRNA:   3'- uUCGCGC--CGC-UUUaGGGCuuGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 53724 0.69 0.583089
Target:  5'- aAGGcCGUGGCG----CUCGAACGCGACu -3'
miRNA:   3'- -UUC-GCGCCGCuuuaGGGCUUGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.