miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 51427 0.7 0.539732
Target:  5'- cGGCGCGcGCGAGGgcgauaCCGu-CACGACg -3'
miRNA:   3'- uUCGCGC-CGCUUUag----GGCuuGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 15476 0.71 0.446962
Target:  5'- gAAGCaCGGCGcuuacaCCGAGCGCGGCg -3'
miRNA:   3'- -UUCGcGCCGCuuuag-GGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 2739 0.71 0.466854
Target:  5'- -uGCGCcuCGAGGUCCCGGaugcgcuucaGCACGGCg -3'
miRNA:   3'- uuCGCGccGCUUUAGGGCU----------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 50403 0.71 0.47697
Target:  5'- -cGCGCGGCGAucagcgCCgCGgAGCGCGAg -3'
miRNA:   3'- uuCGCGCCGCUuua---GG-GC-UUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 36734 0.7 0.507941
Target:  5'- uGGCGCcgcgGGCGcAGUUCUGcGCACGACg -3'
miRNA:   3'- uUCGCG----CCGCuUUAGGGCuUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 61806 0.7 0.512135
Target:  5'- -uGCGCGGCGcaugccucggcgcucGAGUaCCCGAACAgguuUGACu -3'
miRNA:   3'- uuCGCGCCGC---------------UUUA-GGGCUUGU----GCUG- -5'
24066 3' -54.6 NC_005262.1 + 17122 0.7 0.518454
Target:  5'- -cGCGCGGCGAuggaCCacaaGAACGCGcGCg -3'
miRNA:   3'- uuCGCGCCGCUuua-GGg---CUUGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 53450 0.7 0.518454
Target:  5'- gAAGCGCGGCGccggcGUCgaGGACaACGGCg -3'
miRNA:   3'- -UUCGCGCCGCuu---UAGggCUUG-UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 36827 0.7 0.539732
Target:  5'- uGGCGCGGUugcGAcguauGGUgCCGAcgACACGACg -3'
miRNA:   3'- uUCGCGCCG---CU-----UUAgGGCU--UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 16602 0.72 0.437195
Target:  5'- cGAG-GCGGCGAAgcagccgcGUUUCGAGCugGGCg -3'
miRNA:   3'- -UUCgCGCCGCUU--------UAGGGCUUGugCUG- -5'
24066 3' -54.6 NC_005262.1 + 20839 0.72 0.418035
Target:  5'- gGGGCGCGGCa----CCCGcucuACACGACg -3'
miRNA:   3'- -UUCGCGCCGcuuuaGGGCu---UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 51714 0.72 0.407717
Target:  5'- -uGCGCGGCGAGAUcaaaaagCCgGAGCugauCGACc -3'
miRNA:   3'- uuCGCGCCGCUUUA-------GGgCUUGu---GCUG- -5'
24066 3' -54.6 NC_005262.1 + 14312 0.8 0.127312
Target:  5'- gGAGgGCGGCGGAAcCgCCGAGCugGGCg -3'
miRNA:   3'- -UUCgCGCCGCUUUaG-GGCUUGugCUG- -5'
24066 3' -54.6 NC_005262.1 + 38430 0.79 0.163385
Target:  5'- cGGCGCGGuCGAGAUCacgCCGGACgACGGCa -3'
miRNA:   3'- uUCGCGCC-GCUUUAG---GGCUUG-UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 33933 0.78 0.176842
Target:  5'- cGAGCucGCGGCGGgcacgcggcaagcGAUCCCgGAACGCGGCg -3'
miRNA:   3'- -UUCG--CGCCGCU-------------UUAGGG-CUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 57001 0.75 0.270544
Target:  5'- cAAGCGCGaCGAGuUCUCGGGCGCGAUc -3'
miRNA:   3'- -UUCGCGCcGCUUuAGGGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 8920 0.75 0.276815
Target:  5'- -uGCGCGGCGAAAagcgCCCGAuuauuugacccucGCGCGGg -3'
miRNA:   3'- uuCGCGCCGCUUUa---GGGCU-------------UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 51856 0.75 0.291897
Target:  5'- gAAGCGCGGCGccgcGAAcgaCgCGAGCACGACc -3'
miRNA:   3'- -UUCGCGCCGC----UUUa--GgGCUUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 28384 0.73 0.381294
Target:  5'- --cCGCGGCGAAGUguucgaCCCGAACgacgaGCGGCa -3'
miRNA:   3'- uucGCGCCGCUUUA------GGGCUUG-----UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 47379 0.72 0.399394
Target:  5'- aGGGCGCcaagcacgagGGCGAc--CUCGAGCGCGACg -3'
miRNA:   3'- -UUCGCG----------CCGCUuuaGGGCUUGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.