miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 3' -54.6 NC_005262.1 + 8121 0.66 0.787133
Target:  5'- -cGCGCuGCGucAGUCCUG-ACGCGAg -3'
miRNA:   3'- uuCGCGcCGCu-UUAGGGCuUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 39523 0.67 0.714647
Target:  5'- -uGCGUGGCGAgguAAUCCgaGAGCA-GGCc -3'
miRNA:   3'- uuCGCGCCGCU---UUAGGg-CUUGUgCUG- -5'
24066 3' -54.6 NC_005262.1 + 11070 0.67 0.703872
Target:  5'- cGAGCGCgaccGGCGu--UCCCGGcgcgccgaacaGCGCGAa -3'
miRNA:   3'- -UUCGCG----CCGCuuuAGGGCU-----------UGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 14239 0.82 0.107513
Target:  5'- cGGCGCGGCGGAcaAUCCCGGcGCACGcCa -3'
miRNA:   3'- uUCGCGCCGCUU--UAGGGCU-UGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 14283 0.66 0.777173
Target:  5'- cAGUGcCGcGUGGAGUUCCGGAUggaGCGGCu -3'
miRNA:   3'- uUCGC-GC-CGCUUUAGGGCUUG---UGCUG- -5'
24066 3' -54.6 NC_005262.1 + 29488 0.66 0.767063
Target:  5'- cGAGCGUcGCGA--UCgCGAGCGCGuCg -3'
miRNA:   3'- -UUCGCGcCGCUuuAGgGCUUGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 45533 0.66 0.767063
Target:  5'- -cGCGcCGGCGAuGGUUCCGAGCcCGcCc -3'
miRNA:   3'- uuCGC-GCCGCU-UUAGGGCUUGuGCuG- -5'
24066 3' -54.6 NC_005262.1 + 40036 0.66 0.756813
Target:  5'- cGAGCGCaaggagagagGGaGGAAUCCC--GCGCGGCg -3'
miRNA:   3'- -UUCGCG----------CCgCUUUAGGGcuUGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 28511 0.67 0.73594
Target:  5'- cGGCGCGGCccGAUucgacCUCGAGCACGuGCc -3'
miRNA:   3'- uUCGCGCCGcuUUA-----GGGCUUGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 44227 0.67 0.714647
Target:  5'- -cGCGCGcGCGuccggCCgGAACGCGGg -3'
miRNA:   3'- uuCGCGC-CGCuuua-GGgCUUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 6247 0.67 0.724274
Target:  5'- gGAGCGCGuGaCGAucucgaucagcaaAAUCCCGGcCGCGcACa -3'
miRNA:   3'- -UUCGCGC-C-GCU-------------UUAGGGCUuGUGC-UG- -5'
24066 3' -54.6 NC_005262.1 + 45175 0.67 0.73594
Target:  5'- uGAGCGCGGUcaacguGUCCUGcGCGCG-Cg -3'
miRNA:   3'- -UUCGCGCCGcuu---UAGGGCuUGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 22499 0.66 0.787133
Target:  5'- cGAGCagGCGGCGcucGAUCagugCGAACGCGGg -3'
miRNA:   3'- -UUCG--CGCCGCu--UUAGg---GCUUGUGCUg -5'
24066 3' -54.6 NC_005262.1 + 50407 0.67 0.718934
Target:  5'- -uGCGCGGCGGGcgCUgCGGccggcuccucaauccGCGCGGCc -3'
miRNA:   3'- uuCGCGCCGCUUuaGG-GCU---------------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 53641 0.66 0.787133
Target:  5'- -uGCGCGcCGAGcaccAUCUCGGgguACGCGGCg -3'
miRNA:   3'- uuCGCGCcGCUU----UAGGGCU---UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 51153 0.66 0.74539
Target:  5'- -uGCGCGGCGAGcaCCUGAugGugcccguCGAUg -3'
miRNA:   3'- uuCGCGCCGCUUuaGGGCUugU-------GCUG- -5'
24066 3' -54.6 NC_005262.1 + 20608 0.67 0.714647
Target:  5'- cGAGUGgGGUGAGgucGUCgCGAGCGCcGCg -3'
miRNA:   3'- -UUCGCgCCGCUU---UAGgGCUUGUGcUG- -5'
24066 3' -54.6 NC_005262.1 + 57263 0.67 0.713573
Target:  5'- gGAGCgacacgaGCGGCGAGggGUCgCCGGggaugucgaccgACACGGCc -3'
miRNA:   3'- -UUCG-------CGCCGCUU--UAG-GGCU------------UGUGCUG- -5'
24066 3' -54.6 NC_005262.1 + 46174 0.66 0.777173
Target:  5'- cGGCGCGGCc--GUCCUcccaauaugcgGAGCACGuCa -3'
miRNA:   3'- uUCGCGCCGcuuUAGGG-----------CUUGUGCuG- -5'
24066 3' -54.6 NC_005262.1 + 8966 0.66 0.767063
Target:  5'- -cGUGCGGUGug--CCCcAAUGCGACg -3'
miRNA:   3'- uuCGCGCCGCuuuaGGGcUUGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.