miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24066 5' -59.7 NC_005262.1 + 34249 0.66 0.562232
Target:  5'- cGACCuuCGUGCcgGCGacgGCCG-GCGGg -3'
miRNA:   3'- aCUGGu-GCGCG--CGCauaCGGCgCGCC- -5'
24066 5' -59.7 NC_005262.1 + 33445 0.66 0.562232
Target:  5'- cGGCCgGCGgGUugucgaucgGCGgcacgGUGCCGCGCa- -3'
miRNA:   3'- aCUGG-UGCgCG---------CGCa----UACGGCGCGcc -5'
24066 5' -59.7 NC_005262.1 + 50323 0.66 0.562232
Target:  5'- cGGCCGCa-GCGCcc--GCCGCGCaGGa -3'
miRNA:   3'- aCUGGUGcgCGCGcauaCGGCGCG-CC- -5'
24066 5' -59.7 NC_005262.1 + 42936 0.66 0.562232
Target:  5'- aGcCCGCGCGCGUG-AUGCaCG-GCaGGu -3'
miRNA:   3'- aCuGGUGCGCGCGCaUACG-GCgCG-CC- -5'
24066 5' -59.7 NC_005262.1 + 48176 0.66 0.562232
Target:  5'- -cAUCAuCGCGCGuCGgc-GCCGgGCGGc -3'
miRNA:   3'- acUGGU-GCGCGC-GCauaCGGCgCGCC- -5'
24066 5' -59.7 NC_005262.1 + 25323 0.66 0.562232
Target:  5'- cGGCguUGCGCGCGgu--UCGgGCGGa -3'
miRNA:   3'- aCUGguGCGCGCGCauacGGCgCGCC- -5'
24066 5' -59.7 NC_005262.1 + 28159 0.66 0.551944
Target:  5'- cGAgCGCGCgGCGCaacUG-CGCGCGGc -3'
miRNA:   3'- aCUgGUGCG-CGCGcauACgGCGCGCC- -5'
24066 5' -59.7 NC_005262.1 + 58927 0.66 0.551944
Target:  5'- cGACCgaugGCGCGCGCuucUcgGUCgGCGCGc -3'
miRNA:   3'- aCUGG----UGCGCGCGc--AuaCGG-CGCGCc -5'
24066 5' -59.7 NC_005262.1 + 62030 0.66 0.551944
Target:  5'- -cGCCGCGCGCGauccuccuccuCG-AUGCgGCGCa- -3'
miRNA:   3'- acUGGUGCGCGC-----------GCaUACGgCGCGcc -5'
24066 5' -59.7 NC_005262.1 + 48394 0.66 0.551944
Target:  5'- cGACCGCGCcuCGC---UGaaGCGCGGc -3'
miRNA:   3'- aCUGGUGCGc-GCGcauACggCGCGCC- -5'
24066 5' -59.7 NC_005262.1 + 49849 0.66 0.551944
Target:  5'- cGGCCGgagccuCGgGCGCGggcGCCGC-CGGc -3'
miRNA:   3'- aCUGGU------GCgCGCGCauaCGGCGcGCC- -5'
24066 5' -59.7 NC_005262.1 + 45225 0.66 0.551944
Target:  5'- -cGCCuuguCGCGCaCGUucUGgCGCGCGGu -3'
miRNA:   3'- acUGGu---GCGCGcGCAu-ACgGCGCGCC- -5'
24066 5' -59.7 NC_005262.1 + 60605 0.66 0.551944
Target:  5'- cGACCgucACGCucuugGCGgccugcGCCGCGCGGc -3'
miRNA:   3'- aCUGG---UGCGcg---CGCaua---CGGCGCGCC- -5'
24066 5' -59.7 NC_005262.1 + 62192 0.66 0.551944
Target:  5'- --uCCGCGaCGCG-GU-UGCCGCgGCGGc -3'
miRNA:   3'- acuGGUGC-GCGCgCAuACGGCG-CGCC- -5'
24066 5' -59.7 NC_005262.1 + 50080 0.66 0.547845
Target:  5'- aGGCCGCuGCGC-CGaccgaacccgcGCCGCGCGa -3'
miRNA:   3'- aCUGGUG-CGCGcGCaua--------CGGCGCGCc -5'
24066 5' -59.7 NC_005262.1 + 59235 0.66 0.542735
Target:  5'- cGuccuCCAUGCGCGCGgcgacgcggcccgGCCgguucgccucgGCGCGGu -3'
miRNA:   3'- aCu---GGUGCGCGCGCaua----------CGG-----------CGCGCC- -5'
24066 5' -59.7 NC_005262.1 + 46510 0.66 0.541714
Target:  5'- cGACCGCGacgccccugccCGCGCagcaGCCcaGCGCGGc -3'
miRNA:   3'- aCUGGUGC-----------GCGCGcauaCGG--CGCGCC- -5'
24066 5' -59.7 NC_005262.1 + 63436 0.66 0.541714
Target:  5'- -aACCAUGCGCGagaagGUCGCGCa- -3'
miRNA:   3'- acUGGUGCGCGCgcauaCGGCGCGcc -5'
24066 5' -59.7 NC_005262.1 + 8046 0.66 0.541714
Target:  5'- cUGACgCA-GCGCGCGUucuggGUGa-GCGUGGg -3'
miRNA:   3'- -ACUG-GUgCGCGCGCA-----UACggCGCGCC- -5'
24066 5' -59.7 NC_005262.1 + 35542 0.66 0.541714
Target:  5'- cGGCCAaGC-CGCGaUGUcgcucGCCGgCGCGGg -3'
miRNA:   3'- aCUGGUgCGcGCGC-AUA-----CGGC-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.