miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24068 3' -55.2 NC_005262.1 + 16616 0.66 0.75585
Target:  5'- aGCCGCguuUCGAGcugggcgauaucgucGUGCUG-CGCgAGCAc -3'
miRNA:   3'- -CGGCGa--AGUUC---------------CACGACuGCG-UCGUc -5'
24068 3' -55.2 NC_005262.1 + 52995 0.66 0.751718
Target:  5'- gGCCugUUCAAGGgGCUGAUGCccgacAGCAu -3'
miRNA:   3'- -CGGcgAAGUUCCaCGACUGCG-----UCGUc -5'
24068 3' -55.2 NC_005262.1 + 54466 0.66 0.751718
Target:  5'- -gCGCaacgUCGAGGcGCUGcucGCGguGCAGc -3'
miRNA:   3'- cgGCGa---AGUUCCaCGAC---UGCguCGUC- -5'
24068 3' -55.2 NC_005262.1 + 2025 0.66 0.741303
Target:  5'- cGCUGCUUCGuGcUGCUcGACGgGGCGc -3'
miRNA:   3'- -CGGCGAAGUuCcACGA-CUGCgUCGUc -5'
24068 3' -55.2 NC_005262.1 + 61742 0.66 0.741303
Target:  5'- cGCCGCgUCGuGGaUGCUGGgguagagcuCGUAGCAc -3'
miRNA:   3'- -CGGCGaAGUuCC-ACGACU---------GCGUCGUc -5'
24068 3' -55.2 NC_005262.1 + 20813 0.66 0.730778
Target:  5'- aGCCGCgaaucgaCAGGGaacaucGCggGGCGCGGCAc -3'
miRNA:   3'- -CGGCGaa-----GUUCCa-----CGa-CUGCGUCGUc -5'
24068 3' -55.2 NC_005262.1 + 8032 0.66 0.730778
Target:  5'- gGCuCGCgUCAGGa--CUGACGCAGCGc -3'
miRNA:   3'- -CG-GCGaAGUUCcacGACUGCGUCGUc -5'
24068 3' -55.2 NC_005262.1 + 9760 0.66 0.720155
Target:  5'- cCCGUgcgcUCGAuGGUGCUGuAgGCgAGCAGg -3'
miRNA:   3'- cGGCGa---AGUU-CCACGAC-UgCG-UCGUC- -5'
24068 3' -55.2 NC_005262.1 + 61294 0.66 0.720155
Target:  5'- aCCGCUcuaUCGGGuUGCUGcuggucgccaaGCGCGGCAc -3'
miRNA:   3'- cGGCGA---AGUUCcACGAC-----------UGCGUCGUc -5'
24068 3' -55.2 NC_005262.1 + 55167 0.66 0.709443
Target:  5'- gGCCGCgaacaUCAuGGUcGCgGACG-AGCAGa -3'
miRNA:   3'- -CGGCGa----AGUuCCA-CGaCUGCgUCGUC- -5'
24068 3' -55.2 NC_005262.1 + 40461 0.67 0.698656
Target:  5'- gGCCGUggUCGAGcgcGUGCUcguGCGCGGCGc -3'
miRNA:   3'- -CGGCGa-AGUUC---CACGAc--UGCGUCGUc -5'
24068 3' -55.2 NC_005262.1 + 17547 0.67 0.698656
Target:  5'- gGUCGCgcgCGAGGcgGCaGcCGCGGCGGc -3'
miRNA:   3'- -CGGCGaa-GUUCCa-CGaCuGCGUCGUC- -5'
24068 3' -55.2 NC_005262.1 + 1759 0.67 0.687805
Target:  5'- cGCCGCaUCGAGGaGgaGgaucgcGCGCGGCGa -3'
miRNA:   3'- -CGGCGaAGUUCCaCgaC------UGCGUCGUc -5'
24068 3' -55.2 NC_005262.1 + 50866 0.67 0.687805
Target:  5'- uGCCGC----AGGUGCcGACGCAaucGCAc -3'
miRNA:   3'- -CGGCGaaguUCCACGaCUGCGU---CGUc -5'
24068 3' -55.2 NC_005262.1 + 14001 0.67 0.676899
Target:  5'- gGCCGgacggugCAGGG-GCguccGGCGCGGCAGc -3'
miRNA:   3'- -CGGCgaa----GUUCCaCGa---CUGCGUCGUC- -5'
24068 3' -55.2 NC_005262.1 + 40824 0.67 0.662661
Target:  5'- gGCUGCgacgggcaucagcaUUCAGGGUGCgggGACGggcauCAGCAc -3'
miRNA:   3'- -CGGCG--------------AAGUUCCACGa--CUGC-----GUCGUc -5'
24068 3' -55.2 NC_005262.1 + 31829 0.67 0.654972
Target:  5'- aGCUGCUguUCAucuaccugucGGGUGC--ACGCGGCAu -3'
miRNA:   3'- -CGGCGA--AGU----------UCCACGacUGCGUCGUc -5'
24068 3' -55.2 NC_005262.1 + 661 0.67 0.654972
Target:  5'- uGCCGUUgacgAGGGUGCUGcaauCGUAGCc- -3'
miRNA:   3'- -CGGCGAag--UUCCACGACu---GCGUCGuc -5'
24068 3' -55.2 NC_005262.1 + 15735 0.67 0.654972
Target:  5'- cGUCGCggC-AGGUGCgaccGACGCGcuuGCGGg -3'
miRNA:   3'- -CGGCGaaGuUCCACGa---CUGCGU---CGUC- -5'
24068 3' -55.2 NC_005262.1 + 41286 0.68 0.608747
Target:  5'- gGCCGCgcgugggcgacaUCAAGGUa-UGGCGCGGCGc -3'
miRNA:   3'- -CGGCGa-----------AGUUCCAcgACUGCGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.