miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24068 5' -62.7 NC_005262.1 + 9124 0.66 0.386471
Target:  5'- cAGCgGCUaugaGGaCCGGCGcCGggCCGGUCGg -3'
miRNA:   3'- -UCGaCGG----CC-GGUCGC-GCaaGGUCGGC- -5'
24068 5' -62.7 NC_005262.1 + 48273 0.66 0.383918
Target:  5'- --aUGCCGGgCAGCGCGaugCUuggaacaaccucgaGGCCGg -3'
miRNA:   3'- ucgACGGCCgGUCGCGCaa-GG--------------UCGGC- -5'
24068 5' -62.7 NC_005262.1 + 9932 0.66 0.378003
Target:  5'- uGUcgGCCGGCUugAGCGCGaUCUgcuuGCCGu -3'
miRNA:   3'- uCGa-CGGCCGG--UCGCGCaAGGu---CGGC- -5'
24068 5' -62.7 NC_005262.1 + 62742 0.66 0.378003
Target:  5'- cGCUGgCGGUCAGCGCcgcagcaUUCGGCaCGu -3'
miRNA:   3'- uCGACgGCCGGUCGCGca-----AGGUCG-GC- -5'
24068 5' -62.7 NC_005262.1 + 49713 0.66 0.378003
Target:  5'- cGGCgUGCCGGgCGGCGaaccggCGGCCGa -3'
miRNA:   3'- -UCG-ACGGCCgGUCGCgcaag-GUCGGC- -5'
24068 5' -62.7 NC_005262.1 + 4682 0.66 0.378003
Target:  5'- cGCgGCCGGaUCGGgcCGCGgcaUCCAGUCGu -3'
miRNA:   3'- uCGaCGGCC-GGUC--GCGCa--AGGUCGGC- -5'
24068 5' -62.7 NC_005262.1 + 22248 0.66 0.378003
Target:  5'- cGCcgGCCGGCCuGCGCa--UCAcGCCGu -3'
miRNA:   3'- uCGa-CGGCCGGuCGCGcaaGGU-CGGC- -5'
24068 5' -62.7 NC_005262.1 + 12422 0.66 0.378003
Target:  5'- cGGCcuugGCCGGCgucgcggaCGGCGCGgugCCgAGCUGc -3'
miRNA:   3'- -UCGa---CGGCCG--------GUCGCGCaa-GG-UCGGC- -5'
24068 5' -62.7 NC_005262.1 + 52386 0.66 0.378003
Target:  5'- cGGCgGcCCGGCgCGGCGCGgcUUCGGCg- -3'
miRNA:   3'- -UCGaC-GGCCG-GUCGCGCa-AGGUCGgc -5'
24068 5' -62.7 NC_005262.1 + 11262 0.66 0.378003
Target:  5'- ---cGCCuGcGCCAGCGCGaucUCCucGGCCGa -3'
miRNA:   3'- ucgaCGG-C-CGGUCGCGCa--AGG--UCGGC- -5'
24068 5' -62.7 NC_005262.1 + 52767 0.66 0.36966
Target:  5'- uGCUGCgcgCGGUCuuGCGCGa--CAGCCGc -3'
miRNA:   3'- uCGACG---GCCGGu-CGCGCaagGUCGGC- -5'
24068 5' -62.7 NC_005262.1 + 39583 0.66 0.361444
Target:  5'- cGGCgUGCCGGCgCAGCGuCGcggCU-GCCGc -3'
miRNA:   3'- -UCG-ACGGCCG-GUCGC-GCaa-GGuCGGC- -5'
24068 5' -62.7 NC_005262.1 + 22119 0.66 0.353355
Target:  5'- uGCUGCacguGGCCGGCaauCG-UCUGGCCGc -3'
miRNA:   3'- uCGACGg---CCGGUCGc--GCaAGGUCGGC- -5'
24068 5' -62.7 NC_005262.1 + 37237 0.66 0.353355
Target:  5'- cGCgaaCUGGCgCAGCGCGU--CGGCCGc -3'
miRNA:   3'- uCGac-GGCCG-GUCGCGCAagGUCGGC- -5'
24068 5' -62.7 NC_005262.1 + 41101 0.66 0.353355
Target:  5'- cGCcGCCGGCCAcgucgagaucguGCGCG-UCaCGGCgCGc -3'
miRNA:   3'- uCGaCGGCCGGU------------CGCGCaAG-GUCG-GC- -5'
24068 5' -62.7 NC_005262.1 + 5395 0.66 0.353355
Target:  5'- gGGCUGuuGGCgCcuucCGCGUUCUuggacgcgAGCCGg -3'
miRNA:   3'- -UCGACggCCG-Guc--GCGCAAGG--------UCGGC- -5'
24068 5' -62.7 NC_005262.1 + 53832 0.66 0.353355
Target:  5'- gAGCUGacgcaCCGGCgCGGCGCGga-CGGCa- -3'
miRNA:   3'- -UCGAC-----GGCCG-GUCGCGCaagGUCGgc -5'
24068 5' -62.7 NC_005262.1 + 3617 0.66 0.352553
Target:  5'- cGGUUGCCgcccacuGGCCgAGCGCcUUCacggCGGCCGg -3'
miRNA:   3'- -UCGACGG-------CCGG-UCGCGcAAG----GUCGGC- -5'
24068 5' -62.7 NC_005262.1 + 46031 0.66 0.350954
Target:  5'- cGCUGCCGcGCUAcuacgaagucaugcGCGCGUcgCCGGaCUGu -3'
miRNA:   3'- uCGACGGC-CGGU--------------CGCGCAa-GGUC-GGC- -5'
24068 5' -62.7 NC_005262.1 + 2279 0.66 0.350954
Target:  5'- cGCUGggucauCCGGUCgAGCGagaucauuuccgacUGUUCCGGCCGc -3'
miRNA:   3'- uCGAC------GGCCGG-UCGC--------------GCAAGGUCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.