miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24069 3' -61.1 NC_005262.1 + 53503 0.66 0.490329
Target:  5'- aAGUGCagaCGCCgcaGgGGCCGGCCCaGAu -3'
miRNA:   3'- gUCAUG---GCGGac-UgCUGGCCGGGcCU- -5'
24069 3' -61.1 NC_005262.1 + 6589 0.66 0.480644
Target:  5'- --aUGCCGCC-GAcCGGCaGGUCCGGGu -3'
miRNA:   3'- gucAUGGCGGaCU-GCUGgCCGGGCCU- -5'
24069 3' -61.1 NC_005262.1 + 42595 0.66 0.480644
Target:  5'- ---cGCCGCCgGACGACCuGaCCGGc -3'
miRNA:   3'- gucaUGGCGGaCUGCUGGcCgGGCCu -5'
24069 3' -61.1 NC_005262.1 + 33043 0.66 0.480644
Target:  5'- -cGUACCGCCcGACGucguacuaaGCgGGCCCu-- -3'
miRNA:   3'- guCAUGGCGGaCUGC---------UGgCCGGGccu -5'
24069 3' -61.1 NC_005262.1 + 22228 0.66 0.471052
Target:  5'- gAGUACgUG-UUGugGGCgUGGCCCGGAu -3'
miRNA:   3'- gUCAUG-GCgGACugCUG-GCCGGGCCU- -5'
24069 3' -61.1 NC_005262.1 + 22126 0.66 0.471052
Target:  5'- cCGGUGCCGgC-GGCGAUgaCGGCgccgCCGGAa -3'
miRNA:   3'- -GUCAUGGCgGaCUGCUG--GCCG----GGCCU- -5'
24069 3' -61.1 NC_005262.1 + 47395 0.66 0.46156
Target:  5'- gCAGaAUC-CC-GGCGGCCGGCCgGGGc -3'
miRNA:   3'- -GUCaUGGcGGaCUGCUGGCCGGgCCU- -5'
24069 3' -61.1 NC_005262.1 + 48359 0.66 0.452169
Target:  5'- cCGGcGCUG-CUGGCGGCCGGCUaucaguCGGGu -3'
miRNA:   3'- -GUCaUGGCgGACUGCUGGCCGG------GCCU- -5'
24069 3' -61.1 NC_005262.1 + 46250 0.66 0.452169
Target:  5'- gCGGcUGCCGCCUcgcgcGCGACCGcguGCCCGu- -3'
miRNA:   3'- -GUC-AUGGCGGAc----UGCUGGC---CGGGCcu -5'
24069 3' -61.1 NC_005262.1 + 10165 0.66 0.451235
Target:  5'- --aUGCCGCgUccaugucGACGcCCGGCUCGGGa -3'
miRNA:   3'- gucAUGGCGgA-------CUGCuGGCCGGGCCU- -5'
24069 3' -61.1 NC_005262.1 + 45681 0.66 0.442883
Target:  5'- uGGUGCCGCaCUucgugcgcaucGAgGGCCGGCagCCGGc -3'
miRNA:   3'- gUCAUGGCG-GA-----------CUgCUGGCCG--GGCCu -5'
24069 3' -61.1 NC_005262.1 + 41176 0.67 0.433706
Target:  5'- gGGcACCGCCgcgaucGCGugCGcGCCCGGc -3'
miRNA:   3'- gUCaUGGCGGac----UGCugGC-CGGGCCu -5'
24069 3' -61.1 NC_005262.1 + 26692 0.67 0.42464
Target:  5'- gCAGUGCCGU-----GGCCGGCCCGa- -3'
miRNA:   3'- -GUCAUGGCGgacugCUGGCCGGGCcu -5'
24069 3' -61.1 NC_005262.1 + 38819 0.67 0.406853
Target:  5'- --aUGCCGCCUcGACcaaGCCGGCCUGu- -3'
miRNA:   3'- gucAUGGCGGA-CUGc--UGGCCGGGCcu -5'
24069 3' -61.1 NC_005262.1 + 31257 0.67 0.406853
Target:  5'- gGGUugaGCCGCCcgaaGGCGGCCcGUCCGGu -3'
miRNA:   3'- gUCA---UGGCGGa---CUGCUGGcCGGGCCu -5'
24069 3' -61.1 NC_005262.1 + 5077 0.67 0.406853
Target:  5'- gCGGcGgCGCgUG-CGACCGGCUCGGc -3'
miRNA:   3'- -GUCaUgGCGgACuGCUGGCCGGGCCu -5'
24069 3' -61.1 NC_005262.1 + 52646 0.67 0.401609
Target:  5'- gCAGgGCCGCCcGuGCGACCGGagccacgcccagaagUCCGGGu -3'
miRNA:   3'- -GUCaUGGCGGaC-UGCUGGCC---------------GGGCCU- -5'
24069 3' -61.1 NC_005262.1 + 47730 0.67 0.398137
Target:  5'- ---cGCCGCCUGuaucugguGCGccGCCGGCCgCGGc -3'
miRNA:   3'- gucaUGGCGGAC--------UGC--UGGCCGG-GCCu -5'
24069 3' -61.1 NC_005262.1 + 4831 0.67 0.398137
Target:  5'- ---gGCCGCC-GGCGGCCGGCUgGu- -3'
miRNA:   3'- gucaUGGCGGaCUGCUGGCCGGgCcu -5'
24069 3' -61.1 NC_005262.1 + 40083 0.67 0.389541
Target:  5'- gGGUgaucGCCGCgUGGuCGACCGuGCgCCGGu -3'
miRNA:   3'- gUCA----UGGCGgACU-GCUGGC-CG-GGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.