miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24069 5' -55.3 NC_005262.1 + 7630 0.66 0.807609
Target:  5'- aCGUU--GGCCGAaugucgaCGCCGGCGGcGACGg -3'
miRNA:   3'- -GCAAgcUCGGCUa------GCGGCUGCU-CUGU- -5'
24069 5' -55.3 NC_005262.1 + 48083 0.66 0.807609
Target:  5'- ---aCGAGCCGcccggCGCCGACGcgcGAUg -3'
miRNA:   3'- gcaaGCUCGGCua---GCGGCUGCu--CUGu -5'
24069 5' -55.3 NC_005262.1 + 10307 0.66 0.807609
Target:  5'- uCGgUCGgcuGGCUGAgaUCGUCGACGAG-CAc -3'
miRNA:   3'- -GCaAGC---UCGGCU--AGCGGCUGCUCuGU- -5'
24069 5' -55.3 NC_005262.1 + 15149 0.66 0.798256
Target:  5'- cCGgcgUCGAGUCGG-CGCgGAUGuuGGACGg -3'
miRNA:   3'- -GCa--AGCUCGGCUaGCGgCUGC--UCUGU- -5'
24069 5' -55.3 NC_005262.1 + 23435 0.66 0.798256
Target:  5'- gCGUcaUCGAGCCGu---CCGACGAcuGGCGc -3'
miRNA:   3'- -GCA--AGCUCGGCuagcGGCUGCU--CUGU- -5'
24069 5' -55.3 NC_005262.1 + 964 0.66 0.788738
Target:  5'- cCGcgUCGAGCCG-UgGCCGAuCGucGGCAc -3'
miRNA:   3'- -GCa-AGCUCGGCuAgCGGCU-GCu-CUGU- -5'
24069 5' -55.3 NC_005262.1 + 15059 0.66 0.787777
Target:  5'- aGUUCGAGCaggcauGGUCGCUGuACccgccucgggccgGAGGCAa -3'
miRNA:   3'- gCAAGCUCGg-----CUAGCGGC-UG-------------CUCUGU- -5'
24069 5' -55.3 NC_005262.1 + 10639 0.66 0.787777
Target:  5'- aGggCGGguuGCCGAUCGCCGcgucgaagaacucGCGcGGCAu -3'
miRNA:   3'- gCaaGCU---CGGCUAGCGGC-------------UGCuCUGU- -5'
24069 5' -55.3 NC_005262.1 + 63520 0.66 0.779064
Target:  5'- ----gGAGCCGGa-GCCG-CGAGACGa -3'
miRNA:   3'- gcaagCUCGGCUagCGGCuGCUCUGU- -5'
24069 5' -55.3 NC_005262.1 + 1008 0.66 0.779064
Target:  5'- gGUguaGAGCUuGUCGCCGAucuUGAGGCc -3'
miRNA:   3'- gCAag-CUCGGcUAGCGGCU---GCUCUGu -5'
24069 5' -55.3 NC_005262.1 + 50955 0.66 0.779064
Target:  5'- ---cCGAGCUGAa-GCCGACGcAGGCc -3'
miRNA:   3'- gcaaGCUCGGCUagCGGCUGC-UCUGu -5'
24069 5' -55.3 NC_005262.1 + 13150 0.66 0.779064
Target:  5'- --cUgGAGCCGGUUGCugcuCGGCGGcGACAu -3'
miRNA:   3'- gcaAgCUCGGCUAGCG----GCUGCU-CUGU- -5'
24069 5' -55.3 NC_005262.1 + 37729 0.66 0.769245
Target:  5'- gCGUgaaGGGCUGcgCGUCGAaGGGGCAa -3'
miRNA:   3'- -GCAag-CUCGGCuaGCGGCUgCUCUGU- -5'
24069 5' -55.3 NC_005262.1 + 52742 0.66 0.769245
Target:  5'- aGUUcaCGGGCUGGggCGCCaGCGAGAUc -3'
miRNA:   3'- gCAA--GCUCGGCUa-GCGGcUGCUCUGu -5'
24069 5' -55.3 NC_005262.1 + 55856 0.66 0.759291
Target:  5'- aCGUgccCGAGCUGAUgCGCCGcguGCGcucgucauGGACAu -3'
miRNA:   3'- -GCAa--GCUCGGCUA-GCGGC---UGC--------UCUGU- -5'
24069 5' -55.3 NC_005262.1 + 18577 0.66 0.759291
Target:  5'- nGUUCaGGCCGAgC-CCGGCG-GACAu -3'
miRNA:   3'- gCAAGcUCGGCUaGcGGCUGCuCUGU- -5'
24069 5' -55.3 NC_005262.1 + 40932 0.67 0.749213
Target:  5'- --cUCGaAGuCCGAggcaaCGCUGGCGAGAUAg -3'
miRNA:   3'- gcaAGC-UC-GGCUa----GCGGCUGCUCUGU- -5'
24069 5' -55.3 NC_005262.1 + 32753 0.67 0.749213
Target:  5'- cCGUgagCGAcgcgguGCUGAUCGCCGACaagcucGACAc -3'
miRNA:   3'- -GCAa--GCU------CGGCUAGCGGCUGcu----CUGU- -5'
24069 5' -55.3 NC_005262.1 + 51884 0.67 0.749213
Target:  5'- aCGacCGAGCCGAgcCGCCGAac-GGCAc -3'
miRNA:   3'- -GCaaGCUCGGCUa-GCGGCUgcuCUGU- -5'
24069 5' -55.3 NC_005262.1 + 55340 0.67 0.749213
Target:  5'- ---aCGAGUgGAaagccgCGCuCGACGAGACGg -3'
miRNA:   3'- gcaaGCUCGgCUa-----GCG-GCUGCUCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.