miRNA: 3'- cUCGCGAAGCCG--ACUUGga---CAACGac -5'
miRNA: 3'- cUCGCGaAGCCGa--Cu--UGGACAAcGAC- -5'
miRNA: 3'- cUCGCGaagCCGACUUGG-----ACAACGac -5'
miRNA: 3'- cUCGCGAAGCCGa-------CUUG-Ga-----CAACGAC- -5'
miRNA: 3'- -CUCGCGAAGCCGACUUGGACAACGAC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24070 | 3' | -54.4 | NC_005262.1 | + | 1245 | 0.67 | 0.72294 |
|
Target: 5'- aAGUGCUUCGGCgcUGAGCggauaGUUGCg- -3' miRNA: 3'- cUCGCGAAGCCG--ACUUGga---CAACGac -5' |
|||||||
| 24070 | 3' | -54.4 | NC_005262.1 | + | 60570 | 0.67 | 0.690267 |
|
Target: 5'- cGGCGC-UCGGCgcgGucuACCUGUUcCUGa -3' miRNA: 3'- cUCGCGaAGCCGa--Cu--UGGACAAcGAC- -5' |
|||||||
| 24070 | 3' | -54.4 | NC_005262.1 | + | 7739 | 0.68 | 0.634813 |
|
Target: 5'- cAGCGUga-GGCUGAGCUgggaaUGUUGCa- -3' miRNA: 3'- cUCGCGaagCCGACUUGG-----ACAACGac -5' |
|||||||
| 24070 | 3' | -54.4 | NC_005262.1 | + | 36600 | 0.71 | 0.462316 |
|
Target: 5'- aAGCGCUUCGGCgcaaagggGAAUgCgguucgGUUGCUGg -3' miRNA: 3'- cUCGCGAAGCCGa-------CUUG-Ga-----CAACGAC- -5' |
|||||||
| 24070 | 3' | -54.4 | NC_005262.1 | + | 50611 | 1.09 | 0.001105 |
|
Target: 5'- cGAGCGCUUCGGCUGAACCUGUUGCUGg -3' miRNA: 3'- -CUCGCGAAGCCGACUUGGACAACGAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home