miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24070 5' -54.1 NC_005262.1 + 54368 0.65 0.79933
Target:  5'- gGGCuucGCAcccgcucGCCGGCUUguGUAccGGGGCc -3'
miRNA:   3'- -UCGu--CGU-------UGGCCGAGguCAUu-UCCUG- -5'
24070 5' -54.1 NC_005262.1 + 36870 0.65 0.796387
Target:  5'- aGGCGGCGAauCCGGCUCgGGaucgucgcgcGGAUg -3'
miRNA:   3'- -UCGUCGUU--GGCCGAGgUCauuu------CCUG- -5'
24070 5' -54.1 NC_005262.1 + 13487 0.66 0.781441
Target:  5'- cGCuGCGGCCGGCUCCucaauccgcgcggccGUcacGGGCu -3'
miRNA:   3'- uCGuCGUUGGCCGAGGu--------------CAuuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 55414 0.66 0.780432
Target:  5'- gAGCAGCucgagcGCCGGCUggAGgcgAAacAGGGCa -3'
miRNA:   3'- -UCGUCGu-----UGGCCGAggUCa--UU--UCCUG- -5'
24070 5' -54.1 NC_005262.1 + 5733 0.66 0.780432
Target:  5'- cGGCAacacCAACCccuuGGCgggggCCAGUAGaAGGACg -3'
miRNA:   3'- -UCGUc---GUUGG----CCGa----GGUCAUU-UCCUG- -5'
24070 5' -54.1 NC_005262.1 + 40542 0.66 0.776378
Target:  5'- cGCGGCGGgCGGCUCUuacgcgccGGGCa -3'
miRNA:   3'- uCGUCGUUgGCCGAGGucauuu--CCUG- -5'
24070 5' -54.1 NC_005262.1 + 34965 0.66 0.77025
Target:  5'- cGCGGCGcucgGCCGcaagucgaaGCUCCAGgcAGccGGGCa -3'
miRNA:   3'- uCGUCGU----UGGC---------CGAGGUCauUU--CCUG- -5'
24070 5' -54.1 NC_005262.1 + 49920 0.66 0.769224
Target:  5'- gGGCAGCAguaccgccugacgACCGGC-CCGGaUGgcGuGACg -3'
miRNA:   3'- -UCGUCGU-------------UGGCCGaGGUC-AUuuC-CUG- -5'
24070 5' -54.1 NC_005262.1 + 17345 0.66 0.759923
Target:  5'- cGCGGCAuUCGGgUCCGGcgc-GGGCg -3'
miRNA:   3'- uCGUCGUuGGCCgAGGUCauuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 22774 0.66 0.759923
Target:  5'- gAGCGGCAccCCGGCauUCCcGUccgAGGGGAUu -3'
miRNA:   3'- -UCGUCGUu-GGCCG--AGGuCA---UUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 33921 0.66 0.759923
Target:  5'- uAGCGGCGguGCCGaGCUCgCGGc---GGGCa -3'
miRNA:   3'- -UCGUCGU--UGGC-CGAG-GUCauuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 8014 0.66 0.758883
Target:  5'- aGGCGGCAAaggcccuCCGGCUCgCGuc--AGGACu -3'
miRNA:   3'- -UCGUCGUU-------GGCCGAG-GUcauuUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 36641 0.66 0.749461
Target:  5'- uGCGGCcgguguGCCGGCaCCAGUAccaGACa -3'
miRNA:   3'- uCGUCGu-----UGGCCGaGGUCAUuucCUG- -5'
24070 5' -54.1 NC_005262.1 + 30576 0.66 0.747353
Target:  5'- cGGCAGCAAggaCGGCaagaccgccaagCCGcUGAAGGGCg -3'
miRNA:   3'- -UCGUCGUUg--GCCGa-----------GGUcAUUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 12809 0.67 0.738876
Target:  5'- cGGCGcGCAGCCGGCgCguGaaGAAGGAg -3'
miRNA:   3'- -UCGU-CGUUGGCCGaGguCa-UUUCCUg -5'
24070 5' -54.1 NC_005262.1 + 9124 0.67 0.738876
Target:  5'- cAGCGGCuaugagGACCGGCgCCGGgccgGucGGAa -3'
miRNA:   3'- -UCGUCG------UUGGCCGaGGUCa---UuuCCUg -5'
24070 5' -54.1 NC_005262.1 + 53515 0.67 0.738876
Target:  5'- cGCAGgGGCCGGC-CCAGaUAAAcGAg -3'
miRNA:   3'- uCGUCgUUGGCCGaGGUC-AUUUcCUg -5'
24070 5' -54.1 NC_005262.1 + 8167 0.67 0.738876
Target:  5'- gAGCGcGCGGcCCGGCUUCuugcugcgcaGGUAuuGGACc -3'
miRNA:   3'- -UCGU-CGUU-GGCCGAGG----------UCAUuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 286 0.67 0.738876
Target:  5'- cGCGGCu-CCGGCUCCuugcgacaGGcGucGGGCa -3'
miRNA:   3'- uCGUCGuuGGCCGAGG--------UCaUuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 48657 0.67 0.732471
Target:  5'- cGCAGCAggagcucgacaagcuGCCGGCcagcgcguUCCAGcc--GGACg -3'
miRNA:   3'- uCGUCGU---------------UGGCCG--------AGGUCauuuCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.