miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24070 5' -54.1 NC_005262.1 + 50652 1.11 0.000978
Target:  5'- gAGCAGCAACCGGCUCCAGUAAAGGACg -3'
miRNA:   3'- -UCGUCGUUGGCCGAGGUCAUUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 12517 0.83 0.086178
Target:  5'- cGCAGCAGCCGGCggCCGGUGAGGuuCa -3'
miRNA:   3'- uCGUCGUUGGCCGa-GGUCAUUUCcuG- -5'
24070 5' -54.1 NC_005262.1 + 344 0.74 0.312907
Target:  5'- cGaCAGUGACCGGCUCCGGcUGcuggguggcGAGGAUg -3'
miRNA:   3'- uC-GUCGUUGGCCGAGGUC-AU---------UUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 17257 0.73 0.368664
Target:  5'- gAGCGGCGGCCGGCgccgCgcugggcugcugcgCGGgcAGGGGCg -3'
miRNA:   3'- -UCGUCGUUGGCCGa---G--------------GUCauUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 60192 0.73 0.398525
Target:  5'- gGGCGGCAACCGGCaaggagCCGGccggcGAGGuCg -3'
miRNA:   3'- -UCGUCGUUGGCCGa-----GGUCau---UUCCuG- -5'
24070 5' -54.1 NC_005262.1 + 38551 0.72 0.407874
Target:  5'- cGCAGgAGCCGGCguugcgcgcggUUCGGgcgGAAGGGCa -3'
miRNA:   3'- uCGUCgUUGGCCG-----------AGGUCa--UUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 46822 0.71 0.453592
Target:  5'- cGGCAGCAGggcaauaucggugcCCGGCUuggcgguuUCGGUAucGGACa -3'
miRNA:   3'- -UCGUCGUU--------------GGCCGA--------GGUCAUuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 13759 0.71 0.456604
Target:  5'- cGGgAGCAGCCGGCgCCGGcuc-GGGCu -3'
miRNA:   3'- -UCgUCGUUGGCCGaGGUCauuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 14028 0.7 0.518933
Target:  5'- cGGCAGCGGCCGGagccUCGGgcGcGGGCg -3'
miRNA:   3'- -UCGUCGUUGGCCga--GGUCauUuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 32690 0.7 0.562294
Target:  5'- uGcCGGCcGCCGGcCUCCAGgu--GGGCg -3'
miRNA:   3'- uC-GUCGuUGGCC-GAGGUCauuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 57816 0.68 0.64005
Target:  5'- gAGCAGCAGCCGGC-CgAGcaAAAGccGACc -3'
miRNA:   3'- -UCGUCGUUGGCCGaGgUCa-UUUC--CUG- -5'
24070 5' -54.1 NC_005262.1 + 43157 0.68 0.651208
Target:  5'- cGGCAGCGGCCGGCaagaugguUUCAcguGUGgcGGAUu -3'
miRNA:   3'- -UCGUCGUUGGCCG--------AGGU---CAUuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 52150 0.68 0.651208
Target:  5'- uGCAGCGcgacGCCGGCgccgCCgagccgauGGUGcaGGGGGCa -3'
miRNA:   3'- uCGUCGU----UGGCCGa---GG--------UCAU--UUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 36288 0.68 0.651208
Target:  5'- cGCGGCGACgcgaacaccuCGGUcgacUUCGGUGGGGGGCc -3'
miRNA:   3'- uCGUCGUUG----------GCCG----AGGUCAUUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 62694 0.68 0.673459
Target:  5'- aGGCGGCGgaACCGGUggCAGUAAucGGuACg -3'
miRNA:   3'- -UCGUCGU--UGGCCGagGUCAUUu-CC-UG- -5'
24070 5' -54.1 NC_005262.1 + 62758 0.68 0.673459
Target:  5'- cGCAGCAuUCGGCacgugggucgCCAGcGAGGGAUu -3'
miRNA:   3'- uCGUCGUuGGCCGa---------GGUCaUUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 60009 0.68 0.673459
Target:  5'- uGGCcgGGUuccGACCGGCUCCGuucucaucGUcGAAGGGCu -3'
miRNA:   3'- -UCG--UCG---UUGGCCGAGGU--------CA-UUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 49315 0.67 0.695549
Target:  5'- cGuCAGCAGCaGGCUCgCcGUGAuacGGGACa -3'
miRNA:   3'- uC-GUCGUUGgCCGAG-GuCAUU---UCCUG- -5'
24070 5' -54.1 NC_005262.1 + 32147 0.67 0.705412
Target:  5'- cGCAGCGGgCGGCacguggaucgacuUCCAG-AAGGcGGCg -3'
miRNA:   3'- uCGUCGUUgGCCG-------------AGGUCaUUUC-CUG- -5'
24070 5' -54.1 NC_005262.1 + 51059 0.67 0.706505
Target:  5'- cGCAGCcacuGACCGaugacgcgguGCUCCGGc--GGGACg -3'
miRNA:   3'- uCGUCG----UUGGC----------CGAGGUCauuUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.