Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 54368 | 0.65 | 0.79933 |
Target: 5'- gGGCuucGCAcccgcucGCCGGCUUguGUAccGGGGCc -3' miRNA: 3'- -UCGu--CGU-------UGGCCGAGguCAUu-UCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 36870 | 0.65 | 0.796387 |
Target: 5'- aGGCGGCGAauCCGGCUCgGGaucgucgcgcGGAUg -3' miRNA: 3'- -UCGUCGUU--GGCCGAGgUCauuu------CCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 13487 | 0.66 | 0.781441 |
Target: 5'- cGCuGCGGCCGGCUCCucaauccgcgcggccGUcacGGGCu -3' miRNA: 3'- uCGuCGUUGGCCGAGGu--------------CAuuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 55414 | 0.66 | 0.780432 |
Target: 5'- gAGCAGCucgagcGCCGGCUggAGgcgAAacAGGGCa -3' miRNA: 3'- -UCGUCGu-----UGGCCGAggUCa--UU--UCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 5733 | 0.66 | 0.780432 |
Target: 5'- cGGCAacacCAACCccuuGGCgggggCCAGUAGaAGGACg -3' miRNA: 3'- -UCGUc---GUUGG----CCGa----GGUCAUU-UCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 40542 | 0.66 | 0.776378 |
Target: 5'- cGCGGCGGgCGGCUCUuacgcgccGGGCa -3' miRNA: 3'- uCGUCGUUgGCCGAGGucauuu--CCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 34965 | 0.66 | 0.77025 |
Target: 5'- cGCGGCGcucgGCCGcaagucgaaGCUCCAGgcAGccGGGCa -3' miRNA: 3'- uCGUCGU----UGGC---------CGAGGUCauUU--CCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 49920 | 0.66 | 0.769224 |
Target: 5'- gGGCAGCAguaccgccugacgACCGGC-CCGGaUGgcGuGACg -3' miRNA: 3'- -UCGUCGU-------------UGGCCGaGGUC-AUuuC-CUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 17345 | 0.66 | 0.759923 |
Target: 5'- cGCGGCAuUCGGgUCCGGcgc-GGGCg -3' miRNA: 3'- uCGUCGUuGGCCgAGGUCauuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 22774 | 0.66 | 0.759923 |
Target: 5'- gAGCGGCAccCCGGCauUCCcGUccgAGGGGAUu -3' miRNA: 3'- -UCGUCGUu-GGCCG--AGGuCA---UUUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 33921 | 0.66 | 0.759923 |
Target: 5'- uAGCGGCGguGCCGaGCUCgCGGc---GGGCa -3' miRNA: 3'- -UCGUCGU--UGGC-CGAG-GUCauuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 8014 | 0.66 | 0.758883 |
Target: 5'- aGGCGGCAAaggcccuCCGGCUCgCGuc--AGGACu -3' miRNA: 3'- -UCGUCGUU-------GGCCGAG-GUcauuUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 36641 | 0.66 | 0.749461 |
Target: 5'- uGCGGCcgguguGCCGGCaCCAGUAccaGACa -3' miRNA: 3'- uCGUCGu-----UGGCCGaGGUCAUuucCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 30576 | 0.66 | 0.747353 |
Target: 5'- cGGCAGCAAggaCGGCaagaccgccaagCCGcUGAAGGGCg -3' miRNA: 3'- -UCGUCGUUg--GCCGa-----------GGUcAUUUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 12809 | 0.67 | 0.738876 |
Target: 5'- cGGCGcGCAGCCGGCgCguGaaGAAGGAg -3' miRNA: 3'- -UCGU-CGUUGGCCGaGguCa-UUUCCUg -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 9124 | 0.67 | 0.738876 |
Target: 5'- cAGCGGCuaugagGACCGGCgCCGGgccgGucGGAa -3' miRNA: 3'- -UCGUCG------UUGGCCGaGGUCa---UuuCCUg -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 53515 | 0.67 | 0.738876 |
Target: 5'- cGCAGgGGCCGGC-CCAGaUAAAcGAg -3' miRNA: 3'- uCGUCgUUGGCCGaGGUC-AUUUcCUg -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 8167 | 0.67 | 0.738876 |
Target: 5'- gAGCGcGCGGcCCGGCUUCuugcugcgcaGGUAuuGGACc -3' miRNA: 3'- -UCGU-CGUU-GGCCGAGG----------UCAUuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 286 | 0.67 | 0.738876 |
Target: 5'- cGCGGCu-CCGGCUCCuugcgacaGGcGucGGGCa -3' miRNA: 3'- uCGUCGuuGGCCGAGG--------UCaUuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 48657 | 0.67 | 0.732471 |
Target: 5'- cGCAGCAggagcucgacaagcuGCCGGCcagcgcguUCCAGcc--GGACg -3' miRNA: 3'- uCGUCGU---------------UGGCCG--------AGGUCauuuCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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