Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 51236 | 0.67 | 0.72818 |
Target: 5'- gGGCuccucauGCGcGCCGGCUaCGGU-AAGGACg -3' miRNA: 3'- -UCGu------CGU-UGGCCGAgGUCAuUUCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 13222 | 0.67 | 0.716301 |
Target: 5'- gAGCGGCAGCgGGCUCgGGcugcgguUGAAcGGGu -3' miRNA: 3'- -UCGUCGUUGgCCGAGgUC-------AUUU-CCUg -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 51059 | 0.67 | 0.706505 |
Target: 5'- cGCAGCcacuGACCGaugacgcgguGCUCCGGc--GGGACg -3' miRNA: 3'- uCGUCG----UUGGC----------CGAGGUCauuUCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 32147 | 0.67 | 0.705412 |
Target: 5'- cGCAGCGGgCGGCacguggaucgacuUCCAG-AAGGcGGCg -3' miRNA: 3'- uCGUCGUUgGCCG-------------AGGUCaUUUC-CUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 49315 | 0.67 | 0.695549 |
Target: 5'- cGuCAGCAGCaGGCUCgCcGUGAuacGGGACa -3' miRNA: 3'- uC-GUCGUUGgCCGAG-GuCAUU---UCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 62694 | 0.68 | 0.673459 |
Target: 5'- aGGCGGCGgaACCGGUggCAGUAAucGGuACg -3' miRNA: 3'- -UCGUCGU--UGGCCGagGUCAUUu-CC-UG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 60009 | 0.68 | 0.673459 |
Target: 5'- uGGCcgGGUuccGACCGGCUCCGuucucaucGUcGAAGGGCu -3' miRNA: 3'- -UCG--UCG---UUGGCCGAGGU--------CA-UUUCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 62758 | 0.68 | 0.673459 |
Target: 5'- cGCAGCAuUCGGCacgugggucgCCAGcGAGGGAUu -3' miRNA: 3'- uCGUCGUuGGCCGa---------GGUCaUUUCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 43157 | 0.68 | 0.651208 |
Target: 5'- cGGCAGCGGCCGGCaagaugguUUCAcguGUGgcGGAUu -3' miRNA: 3'- -UCGUCGUUGGCCG--------AGGU---CAUuuCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 52150 | 0.68 | 0.651208 |
Target: 5'- uGCAGCGcgacGCCGGCgccgCCgagccgauGGUGcaGGGGGCa -3' miRNA: 3'- uCGUCGU----UGGCCGa---GG--------UCAU--UUCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 36288 | 0.68 | 0.651208 |
Target: 5'- cGCGGCGACgcgaacaccuCGGUcgacUUCGGUGGGGGGCc -3' miRNA: 3'- uCGUCGUUG----------GCCG----AGGUCAUUUCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 57816 | 0.68 | 0.64005 |
Target: 5'- gAGCAGCAGCCGGC-CgAGcaAAAGccGACc -3' miRNA: 3'- -UCGUCGUUGGCCGaGgUCa-UUUC--CUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 32690 | 0.7 | 0.562294 |
Target: 5'- uGcCGGCcGCCGGcCUCCAGgu--GGGCg -3' miRNA: 3'- uC-GUCGuUGGCC-GAGGUCauuuCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 14028 | 0.7 | 0.518933 |
Target: 5'- cGGCAGCGGCCGGagccUCGGgcGcGGGCg -3' miRNA: 3'- -UCGUCGUUGGCCga--GGUCauUuCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 13759 | 0.71 | 0.456604 |
Target: 5'- cGGgAGCAGCCGGCgCCGGcuc-GGGCu -3' miRNA: 3'- -UCgUCGUUGGCCGaGGUCauuuCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 46822 | 0.71 | 0.453592 |
Target: 5'- cGGCAGCAGggcaauaucggugcCCGGCUuggcgguuUCGGUAucGGACa -3' miRNA: 3'- -UCGUCGUU--------------GGCCGA--------GGUCAUuuCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 38551 | 0.72 | 0.407874 |
Target: 5'- cGCAGgAGCCGGCguugcgcgcggUUCGGgcgGAAGGGCa -3' miRNA: 3'- uCGUCgUUGGCCG-----------AGGUCa--UUUCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 60192 | 0.73 | 0.398525 |
Target: 5'- gGGCGGCAACCGGCaaggagCCGGccggcGAGGuCg -3' miRNA: 3'- -UCGUCGUUGGCCGa-----GGUCau---UUCCuG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 17257 | 0.73 | 0.368664 |
Target: 5'- gAGCGGCGGCCGGCgccgCgcugggcugcugcgCGGgcAGGGGCg -3' miRNA: 3'- -UCGUCGUUGGCCGa---G--------------GUCauUUCCUG- -5' |
|||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 344 | 0.74 | 0.312907 |
Target: 5'- cGaCAGUGACCGGCUCCGGcUGcuggguggcGAGGAUg -3' miRNA: 3'- uC-GUCGUUGGCCGAGGUC-AU---------UUCCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home