Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 36288 | 0.68 | 0.651208 |
Target: 5'- cGCGGCGACgcgaacaccuCGGUcgacUUCGGUGGGGGGCc -3' miRNA: 3'- uCGUCGUUG----------GCCG----AGGUCAUUUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 36641 | 0.66 | 0.749461 |
Target: 5'- uGCGGCcgguguGCCGGCaCCAGUAccaGACa -3' miRNA: 3'- uCGUCGu-----UGGCCGaGGUCAUuucCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 36870 | 0.65 | 0.796387 |
Target: 5'- aGGCGGCGAauCCGGCUCgGGaucgucgcgcGGAUg -3' miRNA: 3'- -UCGUCGUU--GGCCGAGgUCauuu------CCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 38551 | 0.72 | 0.407874 |
Target: 5'- cGCAGgAGCCGGCguugcgcgcggUUCGGgcgGAAGGGCa -3' miRNA: 3'- uCGUCgUUGGCCG-----------AGGUCa--UUUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 40542 | 0.66 | 0.776378 |
Target: 5'- cGCGGCGGgCGGCUCUuacgcgccGGGCa -3' miRNA: 3'- uCGUCGUUgGCCGAGGucauuu--CCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 43157 | 0.68 | 0.651208 |
Target: 5'- cGGCAGCGGCCGGCaagaugguUUCAcguGUGgcGGAUu -3' miRNA: 3'- -UCGUCGUUGGCCG--------AGGU---CAUuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 46822 | 0.71 | 0.453592 |
Target: 5'- cGGCAGCAGggcaauaucggugcCCGGCUuggcgguuUCGGUAucGGACa -3' miRNA: 3'- -UCGUCGUU--------------GGCCGA--------GGUCAUuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 48657 | 0.67 | 0.732471 |
Target: 5'- cGCAGCAggagcucgacaagcuGCCGGCcagcgcguUCCAGcc--GGACg -3' miRNA: 3'- uCGUCGU---------------UGGCCG--------AGGUCauuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 49315 | 0.67 | 0.695549 |
Target: 5'- cGuCAGCAGCaGGCUCgCcGUGAuacGGGACa -3' miRNA: 3'- uC-GUCGUUGgCCGAG-GuCAUU---UCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 49920 | 0.66 | 0.769224 |
Target: 5'- gGGCAGCAguaccgccugacgACCGGC-CCGGaUGgcGuGACg -3' miRNA: 3'- -UCGUCGU-------------UGGCCGaGGUC-AUuuC-CUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 50652 | 1.11 | 0.000978 |
Target: 5'- gAGCAGCAACCGGCUCCAGUAAAGGACg -3' miRNA: 3'- -UCGUCGUUGGCCGAGGUCAUUUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 51059 | 0.67 | 0.706505 |
Target: 5'- cGCAGCcacuGACCGaugacgcgguGCUCCGGc--GGGACg -3' miRNA: 3'- uCGUCG----UUGGC----------CGAGGUCauuUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 51236 | 0.67 | 0.72818 |
Target: 5'- gGGCuccucauGCGcGCCGGCUaCGGU-AAGGACg -3' miRNA: 3'- -UCGu------CGU-UGGCCGAgGUCAuUUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 52150 | 0.68 | 0.651208 |
Target: 5'- uGCAGCGcgacGCCGGCgccgCCgagccgauGGUGcaGGGGGCa -3' miRNA: 3'- uCGUCGU----UGGCCGa---GG--------UCAU--UUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 53515 | 0.67 | 0.738876 |
Target: 5'- cGCAGgGGCCGGC-CCAGaUAAAcGAg -3' miRNA: 3'- uCGUCgUUGGCCGaGGUC-AUUUcCUg -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 54368 | 0.65 | 0.79933 |
Target: 5'- gGGCuucGCAcccgcucGCCGGCUUguGUAccGGGGCc -3' miRNA: 3'- -UCGu--CGU-------UGGCCGAGguCAUu-UCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 55414 | 0.66 | 0.780432 |
Target: 5'- gAGCAGCucgagcGCCGGCUggAGgcgAAacAGGGCa -3' miRNA: 3'- -UCGUCGu-----UGGCCGAggUCa--UU--UCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 57816 | 0.68 | 0.64005 |
Target: 5'- gAGCAGCAGCCGGC-CgAGcaAAAGccGACc -3' miRNA: 3'- -UCGUCGUUGGCCGaGgUCa-UUUC--CUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 60009 | 0.68 | 0.673459 |
Target: 5'- uGGCcgGGUuccGACCGGCUCCGuucucaucGUcGAAGGGCu -3' miRNA: 3'- -UCG--UCG---UUGGCCGAGGU--------CA-UUUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 60192 | 0.73 | 0.398525 |
Target: 5'- gGGCGGCAACCGGCaaggagCCGGccggcGAGGuCg -3' miRNA: 3'- -UCGUCGUUGGCCGa-----GGUCau---UUCCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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