miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24070 5' -54.1 NC_005262.1 + 62758 0.68 0.673459
Target:  5'- cGCAGCAuUCGGCacgugggucgCCAGcGAGGGAUu -3'
miRNA:   3'- uCGUCGUuGGCCGa---------GGUCaUUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 62694 0.68 0.673459
Target:  5'- aGGCGGCGgaACCGGUggCAGUAAucGGuACg -3'
miRNA:   3'- -UCGUCGU--UGGCCGagGUCAUUu-CC-UG- -5'
24070 5' -54.1 NC_005262.1 + 60192 0.73 0.398525
Target:  5'- gGGCGGCAACCGGCaaggagCCGGccggcGAGGuCg -3'
miRNA:   3'- -UCGUCGUUGGCCGa-----GGUCau---UUCCuG- -5'
24070 5' -54.1 NC_005262.1 + 60009 0.68 0.673459
Target:  5'- uGGCcgGGUuccGACCGGCUCCGuucucaucGUcGAAGGGCu -3'
miRNA:   3'- -UCG--UCG---UUGGCCGAGGU--------CA-UUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 57816 0.68 0.64005
Target:  5'- gAGCAGCAGCCGGC-CgAGcaAAAGccGACc -3'
miRNA:   3'- -UCGUCGUUGGCCGaGgUCa-UUUC--CUG- -5'
24070 5' -54.1 NC_005262.1 + 55414 0.66 0.780432
Target:  5'- gAGCAGCucgagcGCCGGCUggAGgcgAAacAGGGCa -3'
miRNA:   3'- -UCGUCGu-----UGGCCGAggUCa--UU--UCCUG- -5'
24070 5' -54.1 NC_005262.1 + 54368 0.65 0.79933
Target:  5'- gGGCuucGCAcccgcucGCCGGCUUguGUAccGGGGCc -3'
miRNA:   3'- -UCGu--CGU-------UGGCCGAGguCAUu-UCCUG- -5'
24070 5' -54.1 NC_005262.1 + 53515 0.67 0.738876
Target:  5'- cGCAGgGGCCGGC-CCAGaUAAAcGAg -3'
miRNA:   3'- uCGUCgUUGGCCGaGGUC-AUUUcCUg -5'
24070 5' -54.1 NC_005262.1 + 52150 0.68 0.651208
Target:  5'- uGCAGCGcgacGCCGGCgccgCCgagccgauGGUGcaGGGGGCa -3'
miRNA:   3'- uCGUCGU----UGGCCGa---GG--------UCAU--UUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 51236 0.67 0.72818
Target:  5'- gGGCuccucauGCGcGCCGGCUaCGGU-AAGGACg -3'
miRNA:   3'- -UCGu------CGU-UGGCCGAgGUCAuUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 51059 0.67 0.706505
Target:  5'- cGCAGCcacuGACCGaugacgcgguGCUCCGGc--GGGACg -3'
miRNA:   3'- uCGUCG----UUGGC----------CGAGGUCauuUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 50652 1.11 0.000978
Target:  5'- gAGCAGCAACCGGCUCCAGUAAAGGACg -3'
miRNA:   3'- -UCGUCGUUGGCCGAGGUCAUUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 49920 0.66 0.769224
Target:  5'- gGGCAGCAguaccgccugacgACCGGC-CCGGaUGgcGuGACg -3'
miRNA:   3'- -UCGUCGU-------------UGGCCGaGGUC-AUuuC-CUG- -5'
24070 5' -54.1 NC_005262.1 + 49315 0.67 0.695549
Target:  5'- cGuCAGCAGCaGGCUCgCcGUGAuacGGGACa -3'
miRNA:   3'- uC-GUCGUUGgCCGAG-GuCAUU---UCCUG- -5'
24070 5' -54.1 NC_005262.1 + 48657 0.67 0.732471
Target:  5'- cGCAGCAggagcucgacaagcuGCCGGCcagcgcguUCCAGcc--GGACg -3'
miRNA:   3'- uCGUCGU---------------UGGCCG--------AGGUCauuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 46822 0.71 0.453592
Target:  5'- cGGCAGCAGggcaauaucggugcCCGGCUuggcgguuUCGGUAucGGACa -3'
miRNA:   3'- -UCGUCGUU--------------GGCCGA--------GGUCAUuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 43157 0.68 0.651208
Target:  5'- cGGCAGCGGCCGGCaagaugguUUCAcguGUGgcGGAUu -3'
miRNA:   3'- -UCGUCGUUGGCCG--------AGGU---CAUuuCCUG- -5'
24070 5' -54.1 NC_005262.1 + 40542 0.66 0.776378
Target:  5'- cGCGGCGGgCGGCUCUuacgcgccGGGCa -3'
miRNA:   3'- uCGUCGUUgGCCGAGGucauuu--CCUG- -5'
24070 5' -54.1 NC_005262.1 + 38551 0.72 0.407874
Target:  5'- cGCAGgAGCCGGCguugcgcgcggUUCGGgcgGAAGGGCa -3'
miRNA:   3'- uCGUCgUUGGCCG-----------AGGUCa--UUUCCUG- -5'
24070 5' -54.1 NC_005262.1 + 36870 0.65 0.796387
Target:  5'- aGGCGGCGAauCCGGCUCgGGaucgucgcgcGGAUg -3'
miRNA:   3'- -UCGUCGUU--GGCCGAGgUCauuu------CCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.