Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24070 | 5' | -54.1 | NC_005262.1 | + | 48657 | 0.67 | 0.732471 |
Target: 5'- cGCAGCAggagcucgacaagcuGCCGGCcagcgcguUCCAGcc--GGACg -3' miRNA: 3'- uCGUCGU---------------UGGCCG--------AGGUCauuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 60009 | 0.68 | 0.673459 |
Target: 5'- uGGCcgGGUuccGACCGGCUCCGuucucaucGUcGAAGGGCu -3' miRNA: 3'- -UCG--UCG---UUGGCCGAGGU--------CA-UUUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 52150 | 0.68 | 0.651208 |
Target: 5'- uGCAGCGcgacGCCGGCgccgCCgagccgauGGUGcaGGGGGCa -3' miRNA: 3'- uCGUCGU----UGGCCGa---GG--------UCAU--UUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 43157 | 0.68 | 0.651208 |
Target: 5'- cGGCAGCGGCCGGCaagaugguUUCAcguGUGgcGGAUu -3' miRNA: 3'- -UCGUCGUUGGCCG--------AGGU---CAUuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 57816 | 0.68 | 0.64005 |
Target: 5'- gAGCAGCAGCCGGC-CgAGcaAAAGccGACc -3' miRNA: 3'- -UCGUCGUUGGCCGaGgUCa-UUUC--CUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 14028 | 0.7 | 0.518933 |
Target: 5'- cGGCAGCGGCCGGagccUCGGgcGcGGGCg -3' miRNA: 3'- -UCGUCGUUGGCCga--GGUCauUuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 13759 | 0.71 | 0.456604 |
Target: 5'- cGGgAGCAGCCGGCgCCGGcuc-GGGCu -3' miRNA: 3'- -UCgUCGUUGGCCGaGGUCauuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 46822 | 0.71 | 0.453592 |
Target: 5'- cGGCAGCAGggcaauaucggugcCCGGCUuggcgguuUCGGUAucGGACa -3' miRNA: 3'- -UCGUCGUU--------------GGCCGA--------GGUCAUuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 38551 | 0.72 | 0.407874 |
Target: 5'- cGCAGgAGCCGGCguugcgcgcggUUCGGgcgGAAGGGCa -3' miRNA: 3'- uCGUCgUUGGCCG-----------AGGUCa--UUUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 62694 | 0.68 | 0.673459 |
Target: 5'- aGGCGGCGgaACCGGUggCAGUAAucGGuACg -3' miRNA: 3'- -UCGUCGU--UGGCCGagGUCAUUu-CC-UG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 49315 | 0.67 | 0.695549 |
Target: 5'- cGuCAGCAGCaGGCUCgCcGUGAuacGGGACa -3' miRNA: 3'- uC-GUCGUUGgCCGAG-GuCAUU---UCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 51059 | 0.67 | 0.706505 |
Target: 5'- cGCAGCcacuGACCGaugacgcgguGCUCCGGc--GGGACg -3' miRNA: 3'- uCGUCG----UUGGC----------CGAGGUCauuUCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 12517 | 0.83 | 0.086178 |
Target: 5'- cGCAGCAGCCGGCggCCGGUGAGGuuCa -3' miRNA: 3'- uCGUCGUUGGCCGa-GGUCAUUUCcuG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 36870 | 0.65 | 0.796387 |
Target: 5'- aGGCGGCGAauCCGGCUCgGGaucgucgcgcGGAUg -3' miRNA: 3'- -UCGUCGUU--GGCCGAGgUCauuu------CCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 13487 | 0.66 | 0.781441 |
Target: 5'- cGCuGCGGCCGGCUCCucaauccgcgcggccGUcacGGGCu -3' miRNA: 3'- uCGuCGUUGGCCGAGGu--------------CAuuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 5733 | 0.66 | 0.780432 |
Target: 5'- cGGCAacacCAACCccuuGGCgggggCCAGUAGaAGGACg -3' miRNA: 3'- -UCGUc---GUUGG----CCGa----GGUCAUU-UCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 17345 | 0.66 | 0.759923 |
Target: 5'- cGCGGCAuUCGGgUCCGGcgc-GGGCg -3' miRNA: 3'- uCGUCGUuGGCCgAGGUCauuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 36641 | 0.66 | 0.749461 |
Target: 5'- uGCGGCcgguguGCCGGCaCCAGUAccaGACa -3' miRNA: 3'- uCGUCGu-----UGGCCGaGGUCAUuucCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 8167 | 0.67 | 0.738876 |
Target: 5'- gAGCGcGCGGcCCGGCUUCuugcugcgcaGGUAuuGGACc -3' miRNA: 3'- -UCGU-CGUU-GGCCGAGG----------UCAUuuCCUG- -5' |
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24070 | 5' | -54.1 | NC_005262.1 | + | 13222 | 0.67 | 0.716301 |
Target: 5'- gAGCGGCAGCgGGCUCgGGcugcgguUGAAcGGGu -3' miRNA: 3'- -UCGUCGUUGgCCGAGgUC-------AUUU-CCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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