miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 36318 0.66 0.465675
Target:  5'- gGUgGGGGGCcGGUGCGCUcgcCGGCAa- -3'
miRNA:   3'- gCGgCCUCUGcCCGUGCGA---GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 22612 0.66 0.45622
Target:  5'- uCGCCGG--GCGcGCACGCgaucgCGGCGg- -3'
miRNA:   3'- -GCGGCCucUGCcCGUGCGa----GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 33930 0.66 0.45622
Target:  5'- uGCCGaGcucgcGGCGGGCACGC--GGCAa- -3'
miRNA:   3'- gCGGC-Cu----CUGCCCGUGCGagCCGUag -5'
24071 3' -61.5 NC_005262.1 + 40478 0.66 0.45528
Target:  5'- gGCCGGgcugguaucuggcGGACGGGCA-GaaCGGCAccaUCg -3'
miRNA:   3'- gCGGCC-------------UCUGCCCGUgCgaGCCGU---AG- -5'
24071 3' -61.5 NC_005262.1 + 40108 0.66 0.446869
Target:  5'- gCGCCGGuAGACccaCACGCgccgcucgggCGGCAUCc -3'
miRNA:   3'- -GCGGCC-UCUGcccGUGCGa---------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 29048 0.66 0.446869
Target:  5'- gCGCCGGcacGACGcGCACcguGUUCGGC-UCg -3'
miRNA:   3'- -GCGGCCu--CUGCcCGUG---CGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 44148 0.66 0.446869
Target:  5'- gGCCGGAcgcgcgcgcGAuCGGGCaggaGCGCggCGGCGa- -3'
miRNA:   3'- gCGGCCU---------CU-GCCCG----UGCGa-GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 5362 0.66 0.437626
Target:  5'- uGCCGGGgcguccuuGACGGGCAgGgacgCGGCcguGUCg -3'
miRNA:   3'- gCGGCCU--------CUGCCCGUgCga--GCCG---UAG- -5'
24071 3' -61.5 NC_005262.1 + 5692 0.66 0.437626
Target:  5'- gGCCGGAGcggagGCaGGUGCGCUUuGCGUa -3'
miRNA:   3'- gCGGCCUC-----UGcCCGUGCGAGcCGUAg -5'
24071 3' -61.5 NC_005262.1 + 45265 0.66 0.437626
Target:  5'- uGCCGGucgGGGCuauagcuucgaGGugcuGCGCGCUCGGCuUCu -3'
miRNA:   3'- gCGGCC---UCUG-----------CC----CGUGCGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 35438 0.66 0.436708
Target:  5'- aGUCGGAGuuGCGGcccuugaggcgcuGCACGCgcacgGGCAUCc -3'
miRNA:   3'- gCGGCCUC--UGCC-------------CGUGCGag---CCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 59 0.66 0.427587
Target:  5'- uGCCGGGGAggcCGcGGCuCGCgaagaagUCGGCcgCg -3'
miRNA:   3'- gCGGCCUCU---GC-CCGuGCG-------AGCCGuaG- -5'
24071 3' -61.5 NC_005262.1 + 46139 0.66 0.419475
Target:  5'- aGCuCGGcgcgcuGGCGGGCGaucucugccugcUGCUCGGCGa- -3'
miRNA:   3'- gCG-GCCu-----CUGCCCGU------------GCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 16062 0.66 0.411457
Target:  5'- gGCCGGcggcgcaccagauacAGGCGgcgagccgccgcccGGCGCgguGCUUGGCGUCa -3'
miRNA:   3'- gCGGCC---------------UCUGC--------------CCGUG---CGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 48479 0.66 0.410572
Target:  5'- aGCCGcguGGGcACGGGCgGCGCgaCGGCAg- -3'
miRNA:   3'- gCGGC---CUC-UGCCCG-UGCGa-GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 44671 0.67 0.405287
Target:  5'- aCGCCGGcGACGcGCcCGCgcccgauccgaacgUGGCAUCg -3'
miRNA:   3'- -GCGGCCuCUGCcCGuGCGa-------------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 48300 0.67 0.393123
Target:  5'- uCGCCGGuGAgCGaGCcgccGCGCUCGGUGUa -3'
miRNA:   3'- -GCGGCCuCU-GCcCG----UGCGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 33983 0.67 0.393123
Target:  5'- uGCUGGAcGucgugcguaacAUGGGCGCGgaCGGCGUg -3'
miRNA:   3'- gCGGCCU-C-----------UGCCCGUGCgaGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 5183 0.67 0.393123
Target:  5'- gCGUCGcGGGcGCGGGCGCGgC-CGGCGc- -3'
miRNA:   3'- -GCGGC-CUC-UGCCCGUGC-GaGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 60395 0.67 0.388837
Target:  5'- uCGCCGucucgauguaccuGGACGGGCACGgggcgcauagcauCgugCGGCAUCu -3'
miRNA:   3'- -GCGGCc------------UCUGCCCGUGC-------------Ga--GCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.