miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 35684 0.67 0.367871
Target:  5'- aCGUC-GAG-CGGGCAcggaagcaucCGCUCcGGCGUCg -3'
miRNA:   3'- -GCGGcCUCuGCCCGU----------GCGAG-CCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 40849 0.67 0.367048
Target:  5'- gGUgCGGGGACGGGCAUcagcacgcaaaauGC-CGGCAg- -3'
miRNA:   3'- gCG-GCCUCUGCCCGUG-------------CGaGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 26227 0.67 0.384581
Target:  5'- aCGCUGGuaucGAacaGGaGCGCGUucacgcucaaaUCGGCAUCg -3'
miRNA:   3'- -GCGGCCu---CUg--CC-CGUGCG-----------AGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 34037 0.67 0.375329
Target:  5'- aCGCCGGgcgguugAGGCGGGUuagccgggaGCGC-CGGCu-- -3'
miRNA:   3'- -GCGGCC-------UCUGCCCG---------UGCGaGCCGuag -5'
24071 3' -61.5 NC_005262.1 + 51264 0.67 0.383734
Target:  5'- cCGCCgcaacauGGAGGCGaucGCGuCGCgCGGCAUCu -3'
miRNA:   3'- -GCGG-------CCUCUGCc--CGU-GCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 30980 0.67 0.371173
Target:  5'- uCGCCGGAcaugaggccGACGucgaacgcgauggccGGCGCGCcgcCGGUGUCg -3'
miRNA:   3'- -GCGGCCU---------CUGC---------------CCGUGCGa--GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 14318 0.67 0.359704
Target:  5'- cCGCCGGAGAau-GCGCGCUuCaGCGUg -3'
miRNA:   3'- -GCGGCCUCUgccCGUGCGA-GcCGUAg -5'
24071 3' -61.5 NC_005262.1 + 4816 0.67 0.359704
Target:  5'- gCGCgGGAGGCGugaGGC-CGC-CGGCGg- -3'
miRNA:   3'- -GCGgCCUCUGC---CCGuGCGaGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 60395 0.67 0.388837
Target:  5'- uCGCCGucucgauguaccuGGACGGGCACGgggcgcauagcauCgugCGGCAUCu -3'
miRNA:   3'- -GCGGCc------------UCUGCCCGUGC-------------Ga--GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 57492 0.67 0.359704
Target:  5'- aGCCGGccGACGaGGCGCcgaaGUUCaGCGUCg -3'
miRNA:   3'- gCGGCCu-CUGC-CCGUG----CGAGcCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 37863 0.68 0.323791
Target:  5'- uGCCGGAaaagucGGCGucgcgcguGGCGacguaccaugcgcgcUGCUCGGCAUCg -3'
miRNA:   3'- gCGGCCU------CUGC--------CCGU---------------GCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 11581 0.68 0.320797
Target:  5'- uGCCGGcGGCGGccaGCGCUCGaGCGa- -3'
miRNA:   3'- gCGGCCuCUGCCcg-UGCGAGC-CGUag -5'
24071 3' -61.5 NC_005262.1 + 24884 0.68 0.313404
Target:  5'- cCGCCGGcgcguGACaGGCGaGCUCGGCc-- -3'
miRNA:   3'- -GCGGCCu----CUGcCCGUgCGAGCCGuag -5'
24071 3' -61.5 NC_005262.1 + 4685 0.68 0.313404
Target:  5'- gGCCGGAu-CGGGC-CGC--GGCAUCc -3'
miRNA:   3'- gCGGCCUcuGCCCGuGCGagCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 21701 0.68 0.313404
Target:  5'- uGCUGuacGCGGGCACGCagaUCGGCAa- -3'
miRNA:   3'- gCGGCcucUGCCCGUGCG---AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 47513 0.68 0.343755
Target:  5'- aCGCCGcGAG-CGGcGCGCaGCaaGGCAUUg -3'
miRNA:   3'- -GCGGC-CUCuGCC-CGUG-CGagCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 53583 0.68 0.343755
Target:  5'- uCGUCGcGAGACGGauguucGCAaccgcgucgcCGCUCGGCAg- -3'
miRNA:   3'- -GCGGC-CUCUGCC------CGU----------GCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 45410 0.68 0.320797
Target:  5'- aGCCGGuG-CGGGU-CGUgcaaCGGCAUCu -3'
miRNA:   3'- gCGGCCuCuGCCCGuGCGa---GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 21544 0.68 0.32832
Target:  5'- uCGCCGcaguGAG-CGcGGC--GCUCGGCAUCg -3'
miRNA:   3'- -GCGGC----CUCuGC-CCGugCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 15800 0.68 0.343755
Target:  5'- uCGCgGGGGugcCGGGgAaGCUCGGCAg- -3'
miRNA:   3'- -GCGgCCUCu--GCCCgUgCGAGCCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.