miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 50826 1.08 0.000391
Target:  5'- gCGCCGGAGACGGGCACGCUCGGCAUCc -3'
miRNA:   3'- -GCGGCCUCUGCCCGUGCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 14035 0.81 0.040249
Target:  5'- gGCCGGAGccucgggcGCGGGCGcCGC-CGGCGUCg -3'
miRNA:   3'- gCGGCCUC--------UGCCCGU-GCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 46716 0.76 0.091778
Target:  5'- cCGCCGcGucGACGGGCGCGCcuaUCGGCGc- -3'
miRNA:   3'- -GCGGC-Cu-CUGCCCGUGCG---AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 38446 0.75 0.105013
Target:  5'- aCGCCGGAcGAC-GGCACGCUCGucgccGUAUCc -3'
miRNA:   3'- -GCGGCCU-CUGcCCGUGCGAGC-----CGUAG- -5'
24071 3' -61.5 NC_005262.1 + 60713 0.75 0.115018
Target:  5'- gCGUCGGGGAUGGacgacgacaaggaccGCugGCUCGGCGa- -3'
miRNA:   3'- -GCGGCCUCUGCC---------------CGugCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 63276 0.75 0.120028
Target:  5'- cCGCCGccugcuuGACGGccggcuGCugGCUCGGCGUCg -3'
miRNA:   3'- -GCGGCcu-----CUGCC------CGugCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 46006 0.73 0.152176
Target:  5'- uGCCGGAuugaGGCuGGCuuuGCGCUCGGCcUCg -3'
miRNA:   3'- gCGGCCU----CUGcCCG---UGCGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 13529 0.72 0.173252
Target:  5'- gGCCGGc-GCGGGCGCGCccucguugCGGCgGUCg -3'
miRNA:   3'- gCGGCCucUGCCCGUGCGa-------GCCG-UAG- -5'
24071 3' -61.5 NC_005262.1 + 45431 0.72 0.173252
Target:  5'- gGCCGGGcuuAUGGGCGgGCUCGGaacCAUCg -3'
miRNA:   3'- gCGGCCUc--UGCCCGUgCGAGCC---GUAG- -5'
24071 3' -61.5 NC_005262.1 + 2951 0.72 0.196893
Target:  5'- uCGCUcuauGGGGCGGGCacucACGCUgccCGGCAUCg -3'
miRNA:   3'- -GCGGc---CUCUGCCCG----UGCGA---GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 15583 0.72 0.198902
Target:  5'- aGCUGGAGGCGcGCGCGCgcgaggagcgcgugCGGCAg- -3'
miRNA:   3'- gCGGCCUCUGCcCGUGCGa-------------GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 12914 0.71 0.204001
Target:  5'- uGCUGGAcGACGacaaccugcgcGGCGCGCUgaagggcgugcgcgaCGGCAUCg -3'
miRNA:   3'- gCGGCCU-CUGC-----------CCGUGCGA---------------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 21012 0.71 0.207114
Target:  5'- gCGCCGGAGACgauguaGGGCugGC-CGucCGUCg -3'
miRNA:   3'- -GCGGCCUCUG------CCCGugCGaGCc-GUAG- -5'
24071 3' -61.5 NC_005262.1 + 19124 0.71 0.212395
Target:  5'- -aUCGGGcGCGGGCGCGUcgcCGGCGUCu -3'
miRNA:   3'- gcGGCCUcUGCCCGUGCGa--GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 34122 0.7 0.234103
Target:  5'- uCGCgGGuuGGGCGGGCugcgcggGCGCgggCGGCAUg -3'
miRNA:   3'- -GCGgCC--UCUGCCCG-------UGCGa--GCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 60635 0.7 0.234103
Target:  5'- aCGCUGGcGagcggcgagcaccGCGGGCaagcacucaucGCGCUCGGCAUg -3'
miRNA:   3'- -GCGGCCuC-------------UGCCCG-----------UGCGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 61691 0.7 0.246547
Target:  5'- aGCCGuGAcGAUcaGGGCGCGC-CGGguUCg -3'
miRNA:   3'- gCGGC-CU-CUG--CCCGUGCGaGCCguAG- -5'
24071 3' -61.5 NC_005262.1 + 30906 0.7 0.248979
Target:  5'- cCGCCGGcuuggccgacguucGACGcGGCgaACGCUCGGCGc- -3'
miRNA:   3'- -GCGGCCu-------------CUGC-CCG--UGCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 32696 0.7 0.252664
Target:  5'- cCGCCGGccuccAGGUGGGCGacaucaucgaGCUCGGCGUg -3'
miRNA:   3'- -GCGGCC-----UCUGCCCGUg---------CGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 21787 0.69 0.269801
Target:  5'- gGCCGcccgauucGAGGCGGGCguucgucgcguucuGCGCggCGGUGUCa -3'
miRNA:   3'- gCGGC--------CUCUGCCCG--------------UGCGa-GCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.