miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 13817 0.69 0.277713
Target:  5'- gGCgGGAG-CGGGCGcCGCugucucgUCGGCgAUCg -3'
miRNA:   3'- gCGgCCUCuGCCCGU-GCG-------AGCCG-UAG- -5'
24071 3' -61.5 NC_005262.1 + 16487 0.69 0.278381
Target:  5'- uGCCGGAcGAgcUGGGCgagGCGCUgGGCGc- -3'
miRNA:   3'- gCGGCCU-CU--GCCCG---UGCGAgCCGUag -5'
24071 3' -61.5 NC_005262.1 + 38539 0.69 0.278381
Target:  5'- uGCCaGAGGCGGcGCAggaGC-CGGCGUUg -3'
miRNA:   3'- gCGGcCUCUGCC-CGUg--CGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 46761 0.69 0.285128
Target:  5'- aCGCCGGucguacAGGCGGcG-ACGCgCGGUAUCa -3'
miRNA:   3'- -GCGGCC------UCUGCC-CgUGCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 43364 0.69 0.298301
Target:  5'- uGCCGGAaccgugcaggauaGugGGGC-CGCUCuGCAa- -3'
miRNA:   3'- gCGGCCU-------------CugCCCGuGCGAGcCGUag -5'
24071 3' -61.5 NC_005262.1 + 40720 0.69 0.299007
Target:  5'- gCGUCGauccuGCGGGCGgGUUCGGUAUCg -3'
miRNA:   3'- -GCGGCcuc--UGCCCGUgCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 52409 0.69 0.305422
Target:  5'- aCGCUGGAGGCGaucgcggaggcgcGGCaaaGCGCaaUCGGCAa- -3'
miRNA:   3'- -GCGGCCUCUGC-------------CCG---UGCG--AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 5046 0.69 0.306141
Target:  5'- gGCCGGcgccugaucGGCGGGCAgGCccgCGGCGg- -3'
miRNA:   3'- gCGGCCu--------CUGCCCGUgCGa--GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 25976 0.69 0.306862
Target:  5'- uGCCGcucgcgcaguacacGGCGGGCACGUucgcgacgUCGGUAUCg -3'
miRNA:   3'- gCGGCcu------------CUGCCCGUGCG--------AGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 4685 0.68 0.313404
Target:  5'- gGCCGGAu-CGGGC-CGC--GGCAUCc -3'
miRNA:   3'- gCGGCCUcuGCCCGuGCGagCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 24884 0.68 0.313404
Target:  5'- cCGCCGGcgcguGACaGGCGaGCUCGGCc-- -3'
miRNA:   3'- -GCGGCCu----CUGcCCGUgCGAGCCGuag -5'
24071 3' -61.5 NC_005262.1 + 21701 0.68 0.313404
Target:  5'- uGCUGuacGCGGGCACGCagaUCGGCAa- -3'
miRNA:   3'- gCGGCcucUGCCCGUGCG---AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 11581 0.68 0.320797
Target:  5'- uGCCGGcGGCGGccaGCGCUCGaGCGa- -3'
miRNA:   3'- gCGGCCuCUGCCcg-UGCGAGC-CGUag -5'
24071 3' -61.5 NC_005262.1 + 45410 0.68 0.320797
Target:  5'- aGCCGGuG-CGGGU-CGUgcaaCGGCAUCu -3'
miRNA:   3'- gCGGCCuCuGCCCGuGCGa---GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 37863 0.68 0.323791
Target:  5'- uGCCGGAaaagucGGCGucgcgcguGGCGacguaccaugcgcgcUGCUCGGCAUCg -3'
miRNA:   3'- gCGGCCU------CUGC--------CCGU---------------GCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 21544 0.68 0.32832
Target:  5'- uCGCCGcaguGAG-CGcGGC--GCUCGGCAUCg -3'
miRNA:   3'- -GCGGC----CUCuGC-CCGugCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 53583 0.68 0.343755
Target:  5'- uCGUCGcGAGACGGauguucGCAaccgcgucgcCGCUCGGCAg- -3'
miRNA:   3'- -GCGGC-CUCUGCC------CGU----------GCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 15800 0.68 0.343755
Target:  5'- uCGCgGGGGugcCGGGgAaGCUCGGCAg- -3'
miRNA:   3'- -GCGgCCUCu--GCCCgUgCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 47513 0.68 0.343755
Target:  5'- aCGCCGcGAG-CGGcGCGCaGCaaGGCAUUg -3'
miRNA:   3'- -GCGGC-CUCuGCC-CGUG-CGagCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 4816 0.67 0.359704
Target:  5'- gCGCgGGAGGCGugaGGC-CGC-CGGCGg- -3'
miRNA:   3'- -GCGgCCUCUGC---CCGuGCGaGCCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.