Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24071 | 3' | -61.5 | NC_005262.1 | + | 4816 | 0.67 | 0.359704 |
Target: 5'- gCGCgGGAGGCGugaGGC-CGC-CGGCGg- -3' miRNA: 3'- -GCGgCCUCUGC---CCGuGCGaGCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 14318 | 0.67 | 0.359704 |
Target: 5'- cCGCCGGAGAau-GCGCGCUuCaGCGUg -3' miRNA: 3'- -GCGGCCUCUgccCGUGCGA-GcCGUAg -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 40849 | 0.67 | 0.367048 |
Target: 5'- gGUgCGGGGACGGGCAUcagcacgcaaaauGC-CGGCAg- -3' miRNA: 3'- gCG-GCCUCUGCCCGUG-------------CGaGCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 8151 | 0.67 | 0.367871 |
Target: 5'- uGCCGGAcGCGGccacgaGCGCGCggccCGGCuUCu -3' miRNA: 3'- gCGGCCUcUGCC------CGUGCGa---GCCGuAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 35684 | 0.67 | 0.367871 |
Target: 5'- aCGUC-GAG-CGGGCAcggaagcaucCGCUCcGGCGUCg -3' miRNA: 3'- -GCGGcCUCuGCCCGU----------GCGAG-CCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 30980 | 0.67 | 0.371173 |
Target: 5'- uCGCCGGAcaugaggccGACGucgaacgcgauggccGGCGCGCcgcCGGUGUCg -3' miRNA: 3'- -GCGGCCU---------CUGC---------------CCGUGCGa--GCCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 34037 | 0.67 | 0.375329 |
Target: 5'- aCGCCGGgcgguugAGGCGGGUuagccgggaGCGC-CGGCu-- -3' miRNA: 3'- -GCGGCC-------UCUGCCCG---------UGCGaGCCGuag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 51264 | 0.67 | 0.383734 |
Target: 5'- cCGCCgcaacauGGAGGCGaucGCGuCGCgCGGCAUCu -3' miRNA: 3'- -GCGG-------CCUCUGCc--CGU-GCGaGCCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 26227 | 0.67 | 0.384581 |
Target: 5'- aCGCUGGuaucGAacaGGaGCGCGUucacgcucaaaUCGGCAUCg -3' miRNA: 3'- -GCGGCCu---CUg--CC-CGUGCG-----------AGCCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 60395 | 0.67 | 0.388837 |
Target: 5'- uCGCCGucucgauguaccuGGACGGGCACGgggcgcauagcauCgugCGGCAUCu -3' miRNA: 3'- -GCGGCc------------UCUGCCCGUGC-------------Ga--GCCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 48300 | 0.67 | 0.393123 |
Target: 5'- uCGCCGGuGAgCGaGCcgccGCGCUCGGUGUa -3' miRNA: 3'- -GCGGCCuCU-GCcCG----UGCGAGCCGUAg -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 33983 | 0.67 | 0.393123 |
Target: 5'- uGCUGGAcGucgugcguaacAUGGGCGCGgaCGGCGUg -3' miRNA: 3'- gCGGCCU-C-----------UGCCCGUGCgaGCCGUAg -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 5183 | 0.67 | 0.393123 |
Target: 5'- gCGUCGcGGGcGCGGGCGCGgC-CGGCGc- -3' miRNA: 3'- -GCGGC-CUC-UGCCCGUGC-GaGCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 44671 | 0.67 | 0.405287 |
Target: 5'- aCGCCGGcGACGcGCcCGCgcccgauccgaacgUGGCAUCg -3' miRNA: 3'- -GCGGCCuCUGCcCGuGCGa-------------GCCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 48479 | 0.66 | 0.410572 |
Target: 5'- aGCCGcguGGGcACGGGCgGCGCgaCGGCAg- -3' miRNA: 3'- gCGGC---CUC-UGCCCG-UGCGa-GCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 16062 | 0.66 | 0.411457 |
Target: 5'- gGCCGGcggcgcaccagauacAGGCGgcgagccgccgcccGGCGCgguGCUUGGCGUCa -3' miRNA: 3'- gCGGCC---------------UCUGC--------------CCGUG---CGAGCCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 46139 | 0.66 | 0.419475 |
Target: 5'- aGCuCGGcgcgcuGGCGGGCGaucucugccugcUGCUCGGCGa- -3' miRNA: 3'- gCG-GCCu-----CUGCCCGU------------GCGAGCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 59 | 0.66 | 0.427587 |
Target: 5'- uGCCGGGGAggcCGcGGCuCGCgaagaagUCGGCcgCg -3' miRNA: 3'- gCGGCCUCU---GC-CCGuGCG-------AGCCGuaG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 35438 | 0.66 | 0.436708 |
Target: 5'- aGUCGGAGuuGCGGcccuugaggcgcuGCACGCgcacgGGCAUCc -3' miRNA: 3'- gCGGCCUC--UGCC-------------CGUGCGag---CCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 5362 | 0.66 | 0.437626 |
Target: 5'- uGCCGGGgcguccuuGACGGGCAgGgacgCGGCcguGUCg -3' miRNA: 3'- gCGGCCU--------CUGCCCGUgCga--GCCG---UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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