miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 25976 0.69 0.306862
Target:  5'- uGCCGcucgcgcaguacacGGCGGGCACGUucgcgacgUCGGUAUCg -3'
miRNA:   3'- gCGGCcu------------CUGCCCGUGCG--------AGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 5046 0.69 0.306141
Target:  5'- gGCCGGcgccugaucGGCGGGCAgGCccgCGGCGg- -3'
miRNA:   3'- gCGGCCu--------CUGCCCGUgCGa--GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 52409 0.69 0.305422
Target:  5'- aCGCUGGAGGCGaucgcggaggcgcGGCaaaGCGCaaUCGGCAa- -3'
miRNA:   3'- -GCGGCCUCUGC-------------CCG---UGCG--AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 40720 0.69 0.299007
Target:  5'- gCGUCGauccuGCGGGCGgGUUCGGUAUCg -3'
miRNA:   3'- -GCGGCcuc--UGCCCGUgCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 43364 0.69 0.298301
Target:  5'- uGCCGGAaccgugcaggauaGugGGGC-CGCUCuGCAa- -3'
miRNA:   3'- gCGGCCU-------------CugCCCGuGCGAGcCGUag -5'
24071 3' -61.5 NC_005262.1 + 46761 0.69 0.285128
Target:  5'- aCGCCGGucguacAGGCGGcG-ACGCgCGGUAUCa -3'
miRNA:   3'- -GCGGCC------UCUGCC-CgUGCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 16487 0.69 0.278381
Target:  5'- uGCCGGAcGAgcUGGGCgagGCGCUgGGCGc- -3'
miRNA:   3'- gCGGCCU-CU--GCCCG---UGCGAgCCGUag -5'
24071 3' -61.5 NC_005262.1 + 38539 0.69 0.278381
Target:  5'- uGCCaGAGGCGGcGCAggaGC-CGGCGUUg -3'
miRNA:   3'- gCGGcCUCUGCC-CGUg--CGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 13817 0.69 0.277713
Target:  5'- gGCgGGAG-CGGGCGcCGCugucucgUCGGCgAUCg -3'
miRNA:   3'- gCGgCCUCuGCCCGU-GCG-------AGCCG-UAG- -5'
24071 3' -61.5 NC_005262.1 + 21787 0.69 0.269801
Target:  5'- gGCCGcccgauucGAGGCGGGCguucgucgcguucuGCGCggCGGUGUCa -3'
miRNA:   3'- gCGGC--------CUCUGCCCG--------------UGCGa-GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 32696 0.7 0.252664
Target:  5'- cCGCCGGccuccAGGUGGGCGacaucaucgaGCUCGGCGUg -3'
miRNA:   3'- -GCGGCC-----UCUGCCCGUg---------CGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 30906 0.7 0.248979
Target:  5'- cCGCCGGcuuggccgacguucGACGcGGCgaACGCUCGGCGc- -3'
miRNA:   3'- -GCGGCCu-------------CUGC-CCG--UGCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 61691 0.7 0.246547
Target:  5'- aGCCGuGAcGAUcaGGGCGCGC-CGGguUCg -3'
miRNA:   3'- gCGGC-CU-CUG--CCCGUGCGaGCCguAG- -5'
24071 3' -61.5 NC_005262.1 + 34122 0.7 0.234103
Target:  5'- uCGCgGGuuGGGCGGGCugcgcggGCGCgggCGGCAUg -3'
miRNA:   3'- -GCGgCC--UCUGCCCG-------UGCGa--GCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 60635 0.7 0.234103
Target:  5'- aCGCUGGcGagcggcgagcaccGCGGGCaagcacucaucGCGCUCGGCAUg -3'
miRNA:   3'- -GCGGCCuC-------------UGCCCG-----------UGCGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 19124 0.71 0.212395
Target:  5'- -aUCGGGcGCGGGCGCGUcgcCGGCGUCu -3'
miRNA:   3'- gcGGCCUcUGCCCGUGCGa--GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 21012 0.71 0.207114
Target:  5'- gCGCCGGAGACgauguaGGGCugGC-CGucCGUCg -3'
miRNA:   3'- -GCGGCCUCUG------CCCGugCGaGCc-GUAG- -5'
24071 3' -61.5 NC_005262.1 + 12914 0.71 0.204001
Target:  5'- uGCUGGAcGACGacaaccugcgcGGCGCGCUgaagggcgugcgcgaCGGCAUCg -3'
miRNA:   3'- gCGGCCU-CUGC-----------CCGUGCGA---------------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 15583 0.72 0.198902
Target:  5'- aGCUGGAGGCGcGCGCGCgcgaggagcgcgugCGGCAg- -3'
miRNA:   3'- gCGGCCUCUGCcCGUGCGa-------------GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 2951 0.72 0.196893
Target:  5'- uCGCUcuauGGGGCGGGCacucACGCUgccCGGCAUCg -3'
miRNA:   3'- -GCGGc---CUCUGCCCG----UGCGA---GCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.