miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 59 0.66 0.427587
Target:  5'- uGCCGGGGAggcCGcGGCuCGCgaagaagUCGGCcgCg -3'
miRNA:   3'- gCGGCCUCU---GC-CCGuGCG-------AGCCGuaG- -5'
24071 3' -61.5 NC_005262.1 + 2951 0.72 0.196893
Target:  5'- uCGCUcuauGGGGCGGGCacucACGCUgccCGGCAUCg -3'
miRNA:   3'- -GCGGc---CUCUGCCCG----UGCGA---GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 4685 0.68 0.313404
Target:  5'- gGCCGGAu-CGGGC-CGC--GGCAUCc -3'
miRNA:   3'- gCGGCCUcuGCCCGuGCGagCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 4816 0.67 0.359704
Target:  5'- gCGCgGGAGGCGugaGGC-CGC-CGGCGg- -3'
miRNA:   3'- -GCGgCCUCUGC---CCGuGCGaGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 5046 0.69 0.306141
Target:  5'- gGCCGGcgccugaucGGCGGGCAgGCccgCGGCGg- -3'
miRNA:   3'- gCGGCCu--------CUGCCCGUgCGa--GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 5183 0.67 0.393123
Target:  5'- gCGUCGcGGGcGCGGGCGCGgC-CGGCGc- -3'
miRNA:   3'- -GCGGC-CUC-UGCCCGUGC-GaGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 5362 0.66 0.437626
Target:  5'- uGCCGGGgcguccuuGACGGGCAgGgacgCGGCcguGUCg -3'
miRNA:   3'- gCGGCCU--------CUGCCCGUgCga--GCCG---UAG- -5'
24071 3' -61.5 NC_005262.1 + 5692 0.66 0.437626
Target:  5'- gGCCGGAGcggagGCaGGUGCGCUUuGCGUa -3'
miRNA:   3'- gCGGCCUC-----UGcCCGUGCGAGcCGUAg -5'
24071 3' -61.5 NC_005262.1 + 8151 0.67 0.367871
Target:  5'- uGCCGGAcGCGGccacgaGCGCGCggccCGGCuUCu -3'
miRNA:   3'- gCGGCCUcUGCC------CGUGCGa---GCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 11581 0.68 0.320797
Target:  5'- uGCCGGcGGCGGccaGCGCUCGaGCGa- -3'
miRNA:   3'- gCGGCCuCUGCCcg-UGCGAGC-CGUag -5'
24071 3' -61.5 NC_005262.1 + 12914 0.71 0.204001
Target:  5'- uGCUGGAcGACGacaaccugcgcGGCGCGCUgaagggcgugcgcgaCGGCAUCg -3'
miRNA:   3'- gCGGCCU-CUGC-----------CCGUGCGA---------------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 13529 0.72 0.173252
Target:  5'- gGCCGGc-GCGGGCGCGCccucguugCGGCgGUCg -3'
miRNA:   3'- gCGGCCucUGCCCGUGCGa-------GCCG-UAG- -5'
24071 3' -61.5 NC_005262.1 + 13817 0.69 0.277713
Target:  5'- gGCgGGAG-CGGGCGcCGCugucucgUCGGCgAUCg -3'
miRNA:   3'- gCGgCCUCuGCCCGU-GCG-------AGCCG-UAG- -5'
24071 3' -61.5 NC_005262.1 + 14035 0.81 0.040249
Target:  5'- gGCCGGAGccucgggcGCGGGCGcCGC-CGGCGUCg -3'
miRNA:   3'- gCGGCCUC--------UGCCCGU-GCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 14318 0.67 0.359704
Target:  5'- cCGCCGGAGAau-GCGCGCUuCaGCGUg -3'
miRNA:   3'- -GCGGCCUCUgccCGUGCGA-GcCGUAg -5'
24071 3' -61.5 NC_005262.1 + 15583 0.72 0.198902
Target:  5'- aGCUGGAGGCGcGCGCGCgcgaggagcgcgugCGGCAg- -3'
miRNA:   3'- gCGGCCUCUGCcCGUGCGa-------------GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 15800 0.68 0.343755
Target:  5'- uCGCgGGGGugcCGGGgAaGCUCGGCAg- -3'
miRNA:   3'- -GCGgCCUCu--GCCCgUgCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 16062 0.66 0.411457
Target:  5'- gGCCGGcggcgcaccagauacAGGCGgcgagccgccgcccGGCGCgguGCUUGGCGUCa -3'
miRNA:   3'- gCGGCC---------------UCUGC--------------CCGUG---CGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 16487 0.69 0.278381
Target:  5'- uGCCGGAcGAgcUGGGCgagGCGCUgGGCGc- -3'
miRNA:   3'- gCGGCCU-CU--GCCCG---UGCGAgCCGUag -5'
24071 3' -61.5 NC_005262.1 + 19124 0.71 0.212395
Target:  5'- -aUCGGGcGCGGGCGCGUcgcCGGCGUCu -3'
miRNA:   3'- gcGGCCUcUGCCCGUGCGa--GCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.