miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 21012 0.71 0.207114
Target:  5'- gCGCCGGAGACgauguaGGGCugGC-CGucCGUCg -3'
miRNA:   3'- -GCGGCCUCUG------CCCGugCGaGCc-GUAG- -5'
24071 3' -61.5 NC_005262.1 + 21544 0.68 0.32832
Target:  5'- uCGCCGcaguGAG-CGcGGC--GCUCGGCAUCg -3'
miRNA:   3'- -GCGGC----CUCuGC-CCGugCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 21701 0.68 0.313404
Target:  5'- uGCUGuacGCGGGCACGCagaUCGGCAa- -3'
miRNA:   3'- gCGGCcucUGCCCGUGCG---AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 21787 0.69 0.269801
Target:  5'- gGCCGcccgauucGAGGCGGGCguucgucgcguucuGCGCggCGGUGUCa -3'
miRNA:   3'- gCGGC--------CUCUGCCCG--------------UGCGa-GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 22612 0.66 0.45622
Target:  5'- uCGCCGG--GCGcGCACGCgaucgCGGCGg- -3'
miRNA:   3'- -GCGGCCucUGCcCGUGCGa----GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 24884 0.68 0.313404
Target:  5'- cCGCCGGcgcguGACaGGCGaGCUCGGCc-- -3'
miRNA:   3'- -GCGGCCu----CUGcCCGUgCGAGCCGuag -5'
24071 3' -61.5 NC_005262.1 + 25976 0.69 0.306862
Target:  5'- uGCCGcucgcgcaguacacGGCGGGCACGUucgcgacgUCGGUAUCg -3'
miRNA:   3'- gCGGCcu------------CUGCCCGUGCG--------AGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 26227 0.67 0.384581
Target:  5'- aCGCUGGuaucGAacaGGaGCGCGUucacgcucaaaUCGGCAUCg -3'
miRNA:   3'- -GCGGCCu---CUg--CC-CGUGCG-----------AGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 29048 0.66 0.446869
Target:  5'- gCGCCGGcacGACGcGCACcguGUUCGGC-UCg -3'
miRNA:   3'- -GCGGCCu--CUGCcCGUG---CGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 30906 0.7 0.248979
Target:  5'- cCGCCGGcuuggccgacguucGACGcGGCgaACGCUCGGCGc- -3'
miRNA:   3'- -GCGGCCu-------------CUGC-CCG--UGCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 30980 0.67 0.371173
Target:  5'- uCGCCGGAcaugaggccGACGucgaacgcgauggccGGCGCGCcgcCGGUGUCg -3'
miRNA:   3'- -GCGGCCU---------CUGC---------------CCGUGCGa--GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 32696 0.7 0.252664
Target:  5'- cCGCCGGccuccAGGUGGGCGacaucaucgaGCUCGGCGUg -3'
miRNA:   3'- -GCGGCC-----UCUGCCCGUg---------CGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 33930 0.66 0.45622
Target:  5'- uGCCGaGcucgcGGCGGGCACGC--GGCAa- -3'
miRNA:   3'- gCGGC-Cu----CUGCCCGUGCGagCCGUag -5'
24071 3' -61.5 NC_005262.1 + 33983 0.67 0.393123
Target:  5'- uGCUGGAcGucgugcguaacAUGGGCGCGgaCGGCGUg -3'
miRNA:   3'- gCGGCCU-C-----------UGCCCGUGCgaGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 34037 0.67 0.375329
Target:  5'- aCGCCGGgcgguugAGGCGGGUuagccgggaGCGC-CGGCu-- -3'
miRNA:   3'- -GCGGCC-------UCUGCCCG---------UGCGaGCCGuag -5'
24071 3' -61.5 NC_005262.1 + 34122 0.7 0.234103
Target:  5'- uCGCgGGuuGGGCGGGCugcgcggGCGCgggCGGCAUg -3'
miRNA:   3'- -GCGgCC--UCUGCCCG-------UGCGa--GCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 35438 0.66 0.436708
Target:  5'- aGUCGGAGuuGCGGcccuugaggcgcuGCACGCgcacgGGCAUCc -3'
miRNA:   3'- gCGGCCUC--UGCC-------------CGUGCGag---CCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 35684 0.67 0.367871
Target:  5'- aCGUC-GAG-CGGGCAcggaagcaucCGCUCcGGCGUCg -3'
miRNA:   3'- -GCGGcCUCuGCCCGU----------GCGAG-CCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 36318 0.66 0.465675
Target:  5'- gGUgGGGGGCcGGUGCGCUcgcCGGCAa- -3'
miRNA:   3'- gCGgCCUCUGcCCGUGCGA---GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 37863 0.68 0.323791
Target:  5'- uGCCGGAaaagucGGCGucgcgcguGGCGacguaccaugcgcgcUGCUCGGCAUCg -3'
miRNA:   3'- gCGGCCU------CUGC--------CCGU---------------GCGAGCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.