miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 38446 0.75 0.105013
Target:  5'- aCGCCGGAcGAC-GGCACGCUCGucgccGUAUCc -3'
miRNA:   3'- -GCGGCCU-CUGcCCGUGCGAGC-----CGUAG- -5'
24071 3' -61.5 NC_005262.1 + 38539 0.69 0.278381
Target:  5'- uGCCaGAGGCGGcGCAggaGC-CGGCGUUg -3'
miRNA:   3'- gCGGcCUCUGCC-CGUg--CGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 40108 0.66 0.446869
Target:  5'- gCGCCGGuAGACccaCACGCgccgcucgggCGGCAUCc -3'
miRNA:   3'- -GCGGCC-UCUGcccGUGCGa---------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 40478 0.66 0.45528
Target:  5'- gGCCGGgcugguaucuggcGGACGGGCA-GaaCGGCAccaUCg -3'
miRNA:   3'- gCGGCC-------------UCUGCCCGUgCgaGCCGU---AG- -5'
24071 3' -61.5 NC_005262.1 + 40720 0.69 0.299007
Target:  5'- gCGUCGauccuGCGGGCGgGUUCGGUAUCg -3'
miRNA:   3'- -GCGGCcuc--UGCCCGUgCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 40849 0.67 0.367048
Target:  5'- gGUgCGGGGACGGGCAUcagcacgcaaaauGC-CGGCAg- -3'
miRNA:   3'- gCG-GCCUCUGCCCGUG-------------CGaGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 43364 0.69 0.298301
Target:  5'- uGCCGGAaccgugcaggauaGugGGGC-CGCUCuGCAa- -3'
miRNA:   3'- gCGGCCU-------------CugCCCGuGCGAGcCGUag -5'
24071 3' -61.5 NC_005262.1 + 44148 0.66 0.446869
Target:  5'- gGCCGGAcgcgcgcgcGAuCGGGCaggaGCGCggCGGCGa- -3'
miRNA:   3'- gCGGCCU---------CU-GCCCG----UGCGa-GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 44671 0.67 0.405287
Target:  5'- aCGCCGGcGACGcGCcCGCgcccgauccgaacgUGGCAUCg -3'
miRNA:   3'- -GCGGCCuCUGCcCGuGCGa-------------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 45265 0.66 0.437626
Target:  5'- uGCCGGucgGGGCuauagcuucgaGGugcuGCGCGCUCGGCuUCu -3'
miRNA:   3'- gCGGCC---UCUG-----------CC----CGUGCGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 45410 0.68 0.320797
Target:  5'- aGCCGGuG-CGGGU-CGUgcaaCGGCAUCu -3'
miRNA:   3'- gCGGCCuCuGCCCGuGCGa---GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 45431 0.72 0.173252
Target:  5'- gGCCGGGcuuAUGGGCGgGCUCGGaacCAUCg -3'
miRNA:   3'- gCGGCCUc--UGCCCGUgCGAGCC---GUAG- -5'
24071 3' -61.5 NC_005262.1 + 46006 0.73 0.152176
Target:  5'- uGCCGGAuugaGGCuGGCuuuGCGCUCGGCcUCg -3'
miRNA:   3'- gCGGCCU----CUGcCCG---UGCGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 46139 0.66 0.419475
Target:  5'- aGCuCGGcgcgcuGGCGGGCGaucucugccugcUGCUCGGCGa- -3'
miRNA:   3'- gCG-GCCu-----CUGCCCGU------------GCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 46716 0.76 0.091778
Target:  5'- cCGCCGcGucGACGGGCGCGCcuaUCGGCGc- -3'
miRNA:   3'- -GCGGC-Cu-CUGCCCGUGCG---AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 46761 0.69 0.285128
Target:  5'- aCGCCGGucguacAGGCGGcG-ACGCgCGGUAUCa -3'
miRNA:   3'- -GCGGCC------UCUGCC-CgUGCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 47513 0.68 0.343755
Target:  5'- aCGCCGcGAG-CGGcGCGCaGCaaGGCAUUg -3'
miRNA:   3'- -GCGGC-CUCuGCC-CGUG-CGagCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 48300 0.67 0.393123
Target:  5'- uCGCCGGuGAgCGaGCcgccGCGCUCGGUGUa -3'
miRNA:   3'- -GCGGCCuCU-GCcCG----UGCGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 48479 0.66 0.410572
Target:  5'- aGCCGcguGGGcACGGGCgGCGCgaCGGCAg- -3'
miRNA:   3'- gCGGC---CUC-UGCCCG-UGCGa-GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 50826 1.08 0.000391
Target:  5'- gCGCCGGAGACGGGCACGCUCGGCAUCc -3'
miRNA:   3'- -GCGGCCUCUGCCCGUGCGAGCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.