miRNA display CGI

Results 61 - 69 of 69 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
24071	3'	-61.5	NC_005262.1	+	51264	0.67	0.383734
	Target:  5'- cCGCCgcaacauGGAGGCGaucGCGuCGCgCGGCAUCu -3' miRNA:   3'- -GCGG-------CCUCUGCc--CGU-GCGaGCCGUAG- -5'
24071	3'	-61.5	NC_005262.1	+	52409	0.69	0.305422
	Target:  5'- aCGCUGGAGGCGaucgcggaggcgcGGCaaaGCGCaaUCGGCAa- -3' miRNA:   3'- -GCGGCCUCUGC-------------CCG---UGCG--AGCCGUag -5'
24071	3'	-61.5	NC_005262.1	+	53583	0.68	0.343755
	Target:  5'- uCGUCGcGAGACGGauguucGCAaccgcgucgcCGCUCGGCAg- -3' miRNA:   3'- -GCGGC-CUCUGCC------CGU----------GCGAGCCGUag -5'
24071	3'	-61.5	NC_005262.1	+	57492	0.67	0.359704
	Target:  5'- aGCCGGccGACGaGGCGCcgaaGUUCaGCGUCg -3' miRNA:   3'- gCGGCCu-CUGC-CCGUG----CGAGcCGUAG- -5'
24071	3'	-61.5	NC_005262.1	+	60395	0.67	0.388837
	Target:  5'- uCGCCGucucgauguaccuGGACGGGCACGgggcgcauagcauCgugCGGCAUCu -3' miRNA:   3'- -GCGGCc------------UCUGCCCGUGC-------------Ga--GCCGUAG- -5'
24071	3'	-61.5	NC_005262.1	+	60635	0.7	0.234103
	Target:  5'- aCGCUGGcGagcggcgagcaccGCGGGCaagcacucaucGCGCUCGGCAUg -3' miRNA:   3'- -GCGGCCuC-------------UGCCCG-----------UGCGAGCCGUAg -5'
24071	3'	-61.5	NC_005262.1	+	60713	0.75	0.115018
	Target:  5'- gCGUCGGGGAUGGacgacgacaaggaccGCugGCUCGGCGa- -3' miRNA:   3'- -GCGGCCUCUGCC---------------CGugCGAGCCGUag -5'
24071	3'	-61.5	NC_005262.1	+	61691	0.7	0.246547
	Target:  5'- aGCCGuGAcGAUcaGGGCGCGC-CGGguUCg -3' miRNA:   3'- gCGGC-CU-CUG--CCCGUGCGaGCCguAG- -5'
24071	3'	-61.5	NC_005262.1	+	63276	0.75	0.120028
	Target:  5'- cCGCCGccugcuuGACGGccggcuGCugGCUCGGCGUCg -3' miRNA:   3'- -GCGGCcu-----CUGCC------CGugCGAGCCGUAG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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