miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 63276 0.75 0.120028
Target:  5'- cCGCCGccugcuuGACGGccggcuGCugGCUCGGCGUCg -3'
miRNA:   3'- -GCGGCcu-----CUGCC------CGugCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 61691 0.7 0.246547
Target:  5'- aGCCGuGAcGAUcaGGGCGCGC-CGGguUCg -3'
miRNA:   3'- gCGGC-CU-CUG--CCCGUGCGaGCCguAG- -5'
24071 3' -61.5 NC_005262.1 + 60713 0.75 0.115018
Target:  5'- gCGUCGGGGAUGGacgacgacaaggaccGCugGCUCGGCGa- -3'
miRNA:   3'- -GCGGCCUCUGCC---------------CGugCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 60635 0.7 0.234103
Target:  5'- aCGCUGGcGagcggcgagcaccGCGGGCaagcacucaucGCGCUCGGCAUg -3'
miRNA:   3'- -GCGGCCuC-------------UGCCCG-----------UGCGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 60395 0.67 0.388837
Target:  5'- uCGCCGucucgauguaccuGGACGGGCACGgggcgcauagcauCgugCGGCAUCu -3'
miRNA:   3'- -GCGGCc------------UCUGCCCGUGC-------------Ga--GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 57492 0.67 0.359704
Target:  5'- aGCCGGccGACGaGGCGCcgaaGUUCaGCGUCg -3'
miRNA:   3'- gCGGCCu-CUGC-CCGUG----CGAGcCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 53583 0.68 0.343755
Target:  5'- uCGUCGcGAGACGGauguucGCAaccgcgucgcCGCUCGGCAg- -3'
miRNA:   3'- -GCGGC-CUCUGCC------CGU----------GCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 52409 0.69 0.305422
Target:  5'- aCGCUGGAGGCGaucgcggaggcgcGGCaaaGCGCaaUCGGCAa- -3'
miRNA:   3'- -GCGGCCUCUGC-------------CCG---UGCG--AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 51264 0.67 0.383734
Target:  5'- cCGCCgcaacauGGAGGCGaucGCGuCGCgCGGCAUCu -3'
miRNA:   3'- -GCGG-------CCUCUGCc--CGU-GCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 50826 1.08 0.000391
Target:  5'- gCGCCGGAGACGGGCACGCUCGGCAUCc -3'
miRNA:   3'- -GCGGCCUCUGCCCGUGCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 48479 0.66 0.410572
Target:  5'- aGCCGcguGGGcACGGGCgGCGCgaCGGCAg- -3'
miRNA:   3'- gCGGC---CUC-UGCCCG-UGCGa-GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 48300 0.67 0.393123
Target:  5'- uCGCCGGuGAgCGaGCcgccGCGCUCGGUGUa -3'
miRNA:   3'- -GCGGCCuCU-GCcCG----UGCGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 47513 0.68 0.343755
Target:  5'- aCGCCGcGAG-CGGcGCGCaGCaaGGCAUUg -3'
miRNA:   3'- -GCGGC-CUCuGCC-CGUG-CGagCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 46761 0.69 0.285128
Target:  5'- aCGCCGGucguacAGGCGGcG-ACGCgCGGUAUCa -3'
miRNA:   3'- -GCGGCC------UCUGCC-CgUGCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 46716 0.76 0.091778
Target:  5'- cCGCCGcGucGACGGGCGCGCcuaUCGGCGc- -3'
miRNA:   3'- -GCGGC-Cu-CUGCCCGUGCG---AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 46139 0.66 0.419475
Target:  5'- aGCuCGGcgcgcuGGCGGGCGaucucugccugcUGCUCGGCGa- -3'
miRNA:   3'- gCG-GCCu-----CUGCCCGU------------GCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 46006 0.73 0.152176
Target:  5'- uGCCGGAuugaGGCuGGCuuuGCGCUCGGCcUCg -3'
miRNA:   3'- gCGGCCU----CUGcCCG---UGCGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 45431 0.72 0.173252
Target:  5'- gGCCGGGcuuAUGGGCGgGCUCGGaacCAUCg -3'
miRNA:   3'- gCGGCCUc--UGCCCGUgCGAGCC---GUAG- -5'
24071 3' -61.5 NC_005262.1 + 45410 0.68 0.320797
Target:  5'- aGCCGGuG-CGGGU-CGUgcaaCGGCAUCu -3'
miRNA:   3'- gCGGCCuCuGCCCGuGCGa---GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 45265 0.66 0.437626
Target:  5'- uGCCGGucgGGGCuauagcuucgaGGugcuGCGCGCUCGGCuUCu -3'
miRNA:   3'- gCGGCC---UCUG-----------CC----CGUGCGAGCCGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.