miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 44671 0.67 0.405287
Target:  5'- aCGCCGGcGACGcGCcCGCgcccgauccgaacgUGGCAUCg -3'
miRNA:   3'- -GCGGCCuCUGCcCGuGCGa-------------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 44148 0.66 0.446869
Target:  5'- gGCCGGAcgcgcgcgcGAuCGGGCaggaGCGCggCGGCGa- -3'
miRNA:   3'- gCGGCCU---------CU-GCCCG----UGCGa-GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 43364 0.69 0.298301
Target:  5'- uGCCGGAaccgugcaggauaGugGGGC-CGCUCuGCAa- -3'
miRNA:   3'- gCGGCCU-------------CugCCCGuGCGAGcCGUag -5'
24071 3' -61.5 NC_005262.1 + 40849 0.67 0.367048
Target:  5'- gGUgCGGGGACGGGCAUcagcacgcaaaauGC-CGGCAg- -3'
miRNA:   3'- gCG-GCCUCUGCCCGUG-------------CGaGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 40720 0.69 0.299007
Target:  5'- gCGUCGauccuGCGGGCGgGUUCGGUAUCg -3'
miRNA:   3'- -GCGGCcuc--UGCCCGUgCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 40478 0.66 0.45528
Target:  5'- gGCCGGgcugguaucuggcGGACGGGCA-GaaCGGCAccaUCg -3'
miRNA:   3'- gCGGCC-------------UCUGCCCGUgCgaGCCGU---AG- -5'
24071 3' -61.5 NC_005262.1 + 40108 0.66 0.446869
Target:  5'- gCGCCGGuAGACccaCACGCgccgcucgggCGGCAUCc -3'
miRNA:   3'- -GCGGCC-UCUGcccGUGCGa---------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 38539 0.69 0.278381
Target:  5'- uGCCaGAGGCGGcGCAggaGC-CGGCGUUg -3'
miRNA:   3'- gCGGcCUCUGCC-CGUg--CGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 38446 0.75 0.105013
Target:  5'- aCGCCGGAcGAC-GGCACGCUCGucgccGUAUCc -3'
miRNA:   3'- -GCGGCCU-CUGcCCGUGCGAGC-----CGUAG- -5'
24071 3' -61.5 NC_005262.1 + 37863 0.68 0.323791
Target:  5'- uGCCGGAaaagucGGCGucgcgcguGGCGacguaccaugcgcgcUGCUCGGCAUCg -3'
miRNA:   3'- gCGGCCU------CUGC--------CCGU---------------GCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 36318 0.66 0.465675
Target:  5'- gGUgGGGGGCcGGUGCGCUcgcCGGCAa- -3'
miRNA:   3'- gCGgCCUCUGcCCGUGCGA---GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 35684 0.67 0.367871
Target:  5'- aCGUC-GAG-CGGGCAcggaagcaucCGCUCcGGCGUCg -3'
miRNA:   3'- -GCGGcCUCuGCCCGU----------GCGAG-CCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 35438 0.66 0.436708
Target:  5'- aGUCGGAGuuGCGGcccuugaggcgcuGCACGCgcacgGGCAUCc -3'
miRNA:   3'- gCGGCCUC--UGCC-------------CGUGCGag---CCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 34122 0.7 0.234103
Target:  5'- uCGCgGGuuGGGCGGGCugcgcggGCGCgggCGGCAUg -3'
miRNA:   3'- -GCGgCC--UCUGCCCG-------UGCGa--GCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 34037 0.67 0.375329
Target:  5'- aCGCCGGgcgguugAGGCGGGUuagccgggaGCGC-CGGCu-- -3'
miRNA:   3'- -GCGGCC-------UCUGCCCG---------UGCGaGCCGuag -5'
24071 3' -61.5 NC_005262.1 + 33983 0.67 0.393123
Target:  5'- uGCUGGAcGucgugcguaacAUGGGCGCGgaCGGCGUg -3'
miRNA:   3'- gCGGCCU-C-----------UGCCCGUGCgaGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 33930 0.66 0.45622
Target:  5'- uGCCGaGcucgcGGCGGGCACGC--GGCAa- -3'
miRNA:   3'- gCGGC-Cu----CUGCCCGUGCGagCCGUag -5'
24071 3' -61.5 NC_005262.1 + 32696 0.7 0.252664
Target:  5'- cCGCCGGccuccAGGUGGGCGacaucaucgaGCUCGGCGUg -3'
miRNA:   3'- -GCGGCC-----UCUGCCCGUg---------CGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 30980 0.67 0.371173
Target:  5'- uCGCCGGAcaugaggccGACGucgaacgcgauggccGGCGCGCcgcCGGUGUCg -3'
miRNA:   3'- -GCGGCCU---------CUGC---------------CCGUGCGa--GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 30906 0.7 0.248979
Target:  5'- cCGCCGGcuuggccgacguucGACGcGGCgaACGCUCGGCGc- -3'
miRNA:   3'- -GCGGCCu-------------CUGC-CCG--UGCGAGCCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.