miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 40849 0.67 0.367048
Target:  5'- gGUgCGGGGACGGGCAUcagcacgcaaaauGC-CGGCAg- -3'
miRNA:   3'- gCG-GCCUCUGCCCGUG-------------CGaGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 46761 0.69 0.285128
Target:  5'- aCGCCGGucguacAGGCGGcG-ACGCgCGGUAUCa -3'
miRNA:   3'- -GCGGCC------UCUGCC-CgUGCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 52409 0.69 0.305422
Target:  5'- aCGCUGGAGGCGaucgcggaggcgcGGCaaaGCGCaaUCGGCAa- -3'
miRNA:   3'- -GCGGCCUCUGC-------------CCG---UGCG--AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 5046 0.69 0.306141
Target:  5'- gGCCGGcgccugaucGGCGGGCAgGCccgCGGCGg- -3'
miRNA:   3'- gCGGCCu--------CUGCCCGUgCGa--GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 4685 0.68 0.313404
Target:  5'- gGCCGGAu-CGGGC-CGC--GGCAUCc -3'
miRNA:   3'- gCGGCCUcuGCCCGuGCGagCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 21701 0.68 0.313404
Target:  5'- uGCUGuacGCGGGCACGCagaUCGGCAa- -3'
miRNA:   3'- gCGGCcucUGCCCGUGCG---AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 24884 0.68 0.313404
Target:  5'- cCGCCGGcgcguGACaGGCGaGCUCGGCc-- -3'
miRNA:   3'- -GCGGCCu----CUGcCCGUgCGAGCCGuag -5'
24071 3' -61.5 NC_005262.1 + 11581 0.68 0.320797
Target:  5'- uGCCGGcGGCGGccaGCGCUCGaGCGa- -3'
miRNA:   3'- gCGGCCuCUGCCcg-UGCGAGC-CGUag -5'
24071 3' -61.5 NC_005262.1 + 57492 0.67 0.359704
Target:  5'- aGCCGGccGACGaGGCGCcgaaGUUCaGCGUCg -3'
miRNA:   3'- gCGGCCu-CUGC-CCGUG----CGAGcCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 16487 0.69 0.278381
Target:  5'- uGCCGGAcGAgcUGGGCgagGCGCUgGGCGc- -3'
miRNA:   3'- gCGGCCU-CU--GCCCG---UGCGAgCCGUag -5'
24071 3' -61.5 NC_005262.1 + 32696 0.7 0.252664
Target:  5'- cCGCCGGccuccAGGUGGGCGacaucaucgaGCUCGGCGUg -3'
miRNA:   3'- -GCGGCC-----UCUGCCCGUg---------CGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 61691 0.7 0.246547
Target:  5'- aGCCGuGAcGAUcaGGGCGCGC-CGGguUCg -3'
miRNA:   3'- gCGGC-CU-CUG--CCCGUGCGaGCCguAG- -5'
24071 3' -61.5 NC_005262.1 + 38446 0.75 0.105013
Target:  5'- aCGCCGGAcGAC-GGCACGCUCGucgccGUAUCc -3'
miRNA:   3'- -GCGGCCU-CUGcCCGUGCGAGC-----CGUAG- -5'
24071 3' -61.5 NC_005262.1 + 60713 0.75 0.115018
Target:  5'- gCGUCGGGGAUGGacgacgacaaggaccGCugGCUCGGCGa- -3'
miRNA:   3'- -GCGGCCUCUGCC---------------CGugCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 63276 0.75 0.120028
Target:  5'- cCGCCGccugcuuGACGGccggcuGCugGCUCGGCGUCg -3'
miRNA:   3'- -GCGGCcu-----CUGCC------CGugCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 45431 0.72 0.173252
Target:  5'- gGCCGGGcuuAUGGGCGgGCUCGGaacCAUCg -3'
miRNA:   3'- gCGGCCUc--UGCCCGUgCGAGCC---GUAG- -5'
24071 3' -61.5 NC_005262.1 + 2951 0.72 0.196893
Target:  5'- uCGCUcuauGGGGCGGGCacucACGCUgccCGGCAUCg -3'
miRNA:   3'- -GCGGc---CUCUGCCCG----UGCGA---GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 15583 0.72 0.198902
Target:  5'- aGCUGGAGGCGcGCGCGCgcgaggagcgcgugCGGCAg- -3'
miRNA:   3'- gCGGCCUCUGCcCGUGCGa-------------GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 12914 0.71 0.204001
Target:  5'- uGCUGGAcGACGacaaccugcgcGGCGCGCUgaagggcgugcgcgaCGGCAUCg -3'
miRNA:   3'- gCGGCCU-CUGC-----------CCGUGCGA---------------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 60635 0.7 0.234103
Target:  5'- aCGCUGGcGagcggcgagcaccGCGGGCaagcacucaucGCGCUCGGCAUg -3'
miRNA:   3'- -GCGGCCuC-------------UGCCCG-----------UGCGAGCCGUAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.