miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 63276 0.75 0.120028
Target:  5'- cCGCCGccugcuuGACGGccggcuGCugGCUCGGCGUCg -3'
miRNA:   3'- -GCGGCcu-----CUGCC------CGugCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 45431 0.72 0.173252
Target:  5'- gGCCGGGcuuAUGGGCGgGCUCGGaacCAUCg -3'
miRNA:   3'- gCGGCCUc--UGCCCGUgCGAGCC---GUAG- -5'
24071 3' -61.5 NC_005262.1 + 2951 0.72 0.196893
Target:  5'- uCGCUcuauGGGGCGGGCacucACGCUgccCGGCAUCg -3'
miRNA:   3'- -GCGGc---CUCUGCCCG----UGCGA---GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 15583 0.72 0.198902
Target:  5'- aGCUGGAGGCGcGCGCGCgcgaggagcgcgugCGGCAg- -3'
miRNA:   3'- gCGGCCUCUGCcCGUGCGa-------------GCCGUag -5'
24071 3' -61.5 NC_005262.1 + 12914 0.71 0.204001
Target:  5'- uGCUGGAcGACGacaaccugcgcGGCGCGCUgaagggcgugcgcgaCGGCAUCg -3'
miRNA:   3'- gCGGCCU-CUGC-----------CCGUGCGA---------------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 52409 0.69 0.305422
Target:  5'- aCGCUGGAGGCGaucgcggaggcgcGGCaaaGCGCaaUCGGCAa- -3'
miRNA:   3'- -GCGGCCUCUGC-------------CCG---UGCG--AGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 46761 0.69 0.285128
Target:  5'- aCGCCGGucguacAGGCGGcG-ACGCgCGGUAUCa -3'
miRNA:   3'- -GCGGCC------UCUGCC-CgUGCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 16487 0.69 0.278381
Target:  5'- uGCCGGAcGAgcUGGGCgagGCGCUgGGCGc- -3'
miRNA:   3'- gCGGCCU-CU--GCCCG---UGCGAgCCGUag -5'
24071 3' -61.5 NC_005262.1 + 32696 0.7 0.252664
Target:  5'- cCGCCGGccuccAGGUGGGCGacaucaucgaGCUCGGCGUg -3'
miRNA:   3'- -GCGGCC-----UCUGCCCGUg---------CGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 61691 0.7 0.246547
Target:  5'- aGCCGuGAcGAUcaGGGCGCGC-CGGguUCg -3'
miRNA:   3'- gCGGC-CU-CUG--CCCGUGCGaGCCguAG- -5'
24071 3' -61.5 NC_005262.1 + 60635 0.7 0.234103
Target:  5'- aCGCUGGcGagcggcgagcaccGCGGGCaagcacucaucGCGCUCGGCAUg -3'
miRNA:   3'- -GCGGCCuC-------------UGCCCG-----------UGCGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 16062 0.66 0.411457
Target:  5'- gGCCGGcggcgcaccagauacAGGCGgcgagccgccgcccGGCGCgguGCUUGGCGUCa -3'
miRNA:   3'- gCGGCC---------------UCUGC--------------CCGUG---CGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 46139 0.66 0.419475
Target:  5'- aGCuCGGcgcgcuGGCGGGCGaucucugccugcUGCUCGGCGa- -3'
miRNA:   3'- gCG-GCCu-----CUGCCCGU------------GCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 35438 0.66 0.436708
Target:  5'- aGUCGGAGuuGCGGcccuugaggcgcuGCACGCgcacgGGCAUCc -3'
miRNA:   3'- gCGGCCUC--UGCC-------------CGUGCGag---CCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 5362 0.66 0.437626
Target:  5'- uGCCGGGgcguccuuGACGGGCAgGgacgCGGCcguGUCg -3'
miRNA:   3'- gCGGCCU--------CUGCCCGUgCga--GCCG---UAG- -5'
24071 3' -61.5 NC_005262.1 + 5692 0.66 0.437626
Target:  5'- gGCCGGAGcggagGCaGGUGCGCUUuGCGUa -3'
miRNA:   3'- gCGGCCUC-----UGcCCGUGCGAGcCGUAg -5'
24071 3' -61.5 NC_005262.1 + 45265 0.66 0.437626
Target:  5'- uGCCGGucgGGGCuauagcuucgaGGugcuGCGCGCUCGGCuUCu -3'
miRNA:   3'- gCGGCC---UCUG-----------CC----CGUGCGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 29048 0.66 0.446869
Target:  5'- gCGCCGGcacGACGcGCACcguGUUCGGC-UCg -3'
miRNA:   3'- -GCGGCCu--CUGCcCGUG---CGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 40108 0.66 0.446869
Target:  5'- gCGCCGGuAGACccaCACGCgccgcucgggCGGCAUCc -3'
miRNA:   3'- -GCGGCC-UCUGcccGUGCGa---------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 14035 0.81 0.040249
Target:  5'- gGCCGGAGccucgggcGCGGGCGcCGC-CGGCGUCg -3'
miRNA:   3'- gCGGCCUC--------UGCCCGU-GCGaGCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.