miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24071 3' -61.5 NC_005262.1 + 40720 0.69 0.299007
Target:  5'- gCGUCGauccuGCGGGCGgGUUCGGUAUCg -3'
miRNA:   3'- -GCGGCcuc--UGCCCGUgCGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 43364 0.69 0.298301
Target:  5'- uGCCGGAaccgugcaggauaGugGGGC-CGCUCuGCAa- -3'
miRNA:   3'- gCGGCCU-------------CugCCCGuGCGAGcCGUag -5'
24071 3' -61.5 NC_005262.1 + 38539 0.69 0.278381
Target:  5'- uGCCaGAGGCGGcGCAggaGC-CGGCGUUg -3'
miRNA:   3'- gCGGcCUCUGCC-CGUg--CGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 13817 0.69 0.277713
Target:  5'- gGCgGGAG-CGGGCGcCGCugucucgUCGGCgAUCg -3'
miRNA:   3'- gCGgCCUCuGCCCGU-GCG-------AGCCG-UAG- -5'
24071 3' -61.5 NC_005262.1 + 21787 0.69 0.269801
Target:  5'- gGCCGcccgauucGAGGCGGGCguucgucgcguucuGCGCggCGGUGUCa -3'
miRNA:   3'- gCGGC--------CUCUGCCCG--------------UGCGa-GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 8151 0.67 0.367871
Target:  5'- uGCCGGAcGCGGccacgaGCGCGCggccCGGCuUCu -3'
miRNA:   3'- gCGGCCUcUGCC------CGUGCGa---GCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 30980 0.67 0.371173
Target:  5'- uCGCCGGAcaugaggccGACGucgaacgcgauggccGGCGCGCcgcCGGUGUCg -3'
miRNA:   3'- -GCGGCCU---------CUGC---------------CCGUGCGa--GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 40108 0.66 0.446869
Target:  5'- gCGCCGGuAGACccaCACGCgccgcucgggCGGCAUCc -3'
miRNA:   3'- -GCGGCC-UCUGcccGUGCGa---------GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 29048 0.66 0.446869
Target:  5'- gCGCCGGcacGACGcGCACcguGUUCGGC-UCg -3'
miRNA:   3'- -GCGGCCu--CUGCcCGUG---CGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 45265 0.66 0.437626
Target:  5'- uGCCGGucgGGGCuauagcuucgaGGugcuGCGCGCUCGGCuUCu -3'
miRNA:   3'- gCGGCC---UCUG-----------CC----CGUGCGAGCCGuAG- -5'
24071 3' -61.5 NC_005262.1 + 5692 0.66 0.437626
Target:  5'- gGCCGGAGcggagGCaGGUGCGCUUuGCGUa -3'
miRNA:   3'- gCGGCCUC-----UGcCCGUGCGAGcCGUAg -5'
24071 3' -61.5 NC_005262.1 + 5362 0.66 0.437626
Target:  5'- uGCCGGGgcguccuuGACGGGCAgGgacgCGGCcguGUCg -3'
miRNA:   3'- gCGGCCU--------CUGCCCGUgCga--GCCG---UAG- -5'
24071 3' -61.5 NC_005262.1 + 35438 0.66 0.436708
Target:  5'- aGUCGGAGuuGCGGcccuugaggcgcuGCACGCgcacgGGCAUCc -3'
miRNA:   3'- gCGGCCUC--UGCC-------------CGUGCGag---CCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 46139 0.66 0.419475
Target:  5'- aGCuCGGcgcgcuGGCGGGCGaucucugccugcUGCUCGGCGa- -3'
miRNA:   3'- gCG-GCCu-----CUGCCCGU------------GCGAGCCGUag -5'
24071 3' -61.5 NC_005262.1 + 16062 0.66 0.411457
Target:  5'- gGCCGGcggcgcaccagauacAGGCGgcgagccgccgcccGGCGCgguGCUUGGCGUCa -3'
miRNA:   3'- gCGGCC---------------UCUGC--------------CCGUG---CGAGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 48300 0.67 0.393123
Target:  5'- uCGCCGGuGAgCGaGCcgccGCGCUCGGUGUa -3'
miRNA:   3'- -GCGGCCuCU-GCcCG----UGCGAGCCGUAg -5'
24071 3' -61.5 NC_005262.1 + 60395 0.67 0.388837
Target:  5'- uCGCCGucucgauguaccuGGACGGGCACGgggcgcauagcauCgugCGGCAUCu -3'
miRNA:   3'- -GCGGCc------------UCUGCCCGUGC-------------Ga--GCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 26227 0.67 0.384581
Target:  5'- aCGCUGGuaucGAacaGGaGCGCGUucacgcucaaaUCGGCAUCg -3'
miRNA:   3'- -GCGGCCu---CUg--CC-CGUGCG-----------AGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 51264 0.67 0.383734
Target:  5'- cCGCCgcaacauGGAGGCGaucGCGuCGCgCGGCAUCu -3'
miRNA:   3'- -GCGG-------CCUCUGCc--CGU-GCGaGCCGUAG- -5'
24071 3' -61.5 NC_005262.1 + 34037 0.67 0.375329
Target:  5'- aCGCCGGgcgguugAGGCGGGUuagccgggaGCGC-CGGCu-- -3'
miRNA:   3'- -GCGGCC-------UCUGCCCG---------UGCGaGCCGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.