Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24071 | 3' | -61.5 | NC_005262.1 | + | 60713 | 0.75 | 0.115018 |
Target: 5'- gCGUCGGGGAUGGacgacgacaaggaccGCugGCUCGGCGa- -3' miRNA: 3'- -GCGGCCUCUGCC---------------CGugCGAGCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 32696 | 0.7 | 0.252664 |
Target: 5'- cCGCCGGccuccAGGUGGGCGacaucaucgaGCUCGGCGUg -3' miRNA: 3'- -GCGGCC-----UCUGCCCGUg---------CGAGCCGUAg -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 61691 | 0.7 | 0.246547 |
Target: 5'- aGCCGuGAcGAUcaGGGCGCGC-CGGguUCg -3' miRNA: 3'- gCGGC-CU-CUG--CCCGUGCGaGCCguAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 45431 | 0.72 | 0.173252 |
Target: 5'- gGCCGGGcuuAUGGGCGgGCUCGGaacCAUCg -3' miRNA: 3'- gCGGCCUc--UGCCCGUgCGAGCC---GUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 2951 | 0.72 | 0.196893 |
Target: 5'- uCGCUcuauGGGGCGGGCacucACGCUgccCGGCAUCg -3' miRNA: 3'- -GCGGc---CUCUGCCCG----UGCGA---GCCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 36318 | 0.66 | 0.465675 |
Target: 5'- gGUgGGGGGCcGGUGCGCUcgcCGGCAa- -3' miRNA: 3'- gCGgCCUCUGcCCGUGCGA---GCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 46761 | 0.69 | 0.285128 |
Target: 5'- aCGCCGGucguacAGGCGGcG-ACGCgCGGUAUCa -3' miRNA: 3'- -GCGGCC------UCUGCC-CgUGCGaGCCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 52409 | 0.69 | 0.305422 |
Target: 5'- aCGCUGGAGGCGaucgcggaggcgcGGCaaaGCGCaaUCGGCAa- -3' miRNA: 3'- -GCGGCCUCUGC-------------CCG---UGCG--AGCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 40478 | 0.66 | 0.45528 |
Target: 5'- gGCCGGgcugguaucuggcGGACGGGCA-GaaCGGCAccaUCg -3' miRNA: 3'- gCGGCC-------------UCUGCCCGUgCgaGCCGU---AG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 44148 | 0.66 | 0.446869 |
Target: 5'- gGCCGGAcgcgcgcgcGAuCGGGCaggaGCGCggCGGCGa- -3' miRNA: 3'- gCGGCCU---------CU-GCCCG----UGCGa-GCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 59 | 0.66 | 0.427587 |
Target: 5'- uGCCGGGGAggcCGcGGCuCGCgaagaagUCGGCcgCg -3' miRNA: 3'- gCGGCCUCU---GC-CCGuGCG-------AGCCGuaG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 48479 | 0.66 | 0.410572 |
Target: 5'- aGCCGcguGGGcACGGGCgGCGCgaCGGCAg- -3' miRNA: 3'- gCGGC---CUC-UGCCCG-UGCGa-GCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 44671 | 0.67 | 0.405287 |
Target: 5'- aCGCCGGcGACGcGCcCGCgcccgauccgaacgUGGCAUCg -3' miRNA: 3'- -GCGGCCuCUGCcCGuGCGa-------------GCCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 33983 | 0.67 | 0.393123 |
Target: 5'- uGCUGGAcGucgugcguaacAUGGGCGCGgaCGGCGUg -3' miRNA: 3'- gCGGCCU-C-----------UGCCCGUGCgaGCCGUAg -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 5183 | 0.67 | 0.393123 |
Target: 5'- gCGUCGcGGGcGCGGGCGCGgC-CGGCGc- -3' miRNA: 3'- -GCGGC-CUC-UGCCCGUGC-GaGCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 35684 | 0.67 | 0.367871 |
Target: 5'- aCGUC-GAG-CGGGCAcggaagcaucCGCUCcGGCGUCg -3' miRNA: 3'- -GCGGcCUCuGCCCGU----------GCGAG-CCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 40849 | 0.67 | 0.367048 |
Target: 5'- gGUgCGGGGACGGGCAUcagcacgcaaaauGC-CGGCAg- -3' miRNA: 3'- gCG-GCCUCUGCCCGUG-------------CGaGCCGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 57492 | 0.67 | 0.359704 |
Target: 5'- aGCCGGccGACGaGGCGCcgaaGUUCaGCGUCg -3' miRNA: 3'- gCGGCCu-CUGC-CCGUG----CGAGcCGUAG- -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 11581 | 0.68 | 0.320797 |
Target: 5'- uGCCGGcGGCGGccaGCGCUCGaGCGa- -3' miRNA: 3'- gCGGCCuCUGCCcg-UGCGAGC-CGUag -5' |
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24071 | 3' | -61.5 | NC_005262.1 | + | 5046 | 0.69 | 0.306141 |
Target: 5'- gGCCGGcgccugaucGGCGGGCAgGCccgCGGCGg- -3' miRNA: 3'- gCGGCCu--------CUGCCCGUgCGa--GCCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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