Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24071 | 3' | -61.5 | NC_005262.1 | + | 44671 | 0.67 | 0.405287 |
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Target: 5'- aCGCCGGcGACGcGCcCGCgcccgauccgaacgUGGCAUCg -3' miRNA: 3'- -GCGGCCuCUGCcCGuGCGa-------------GCCGUAG- -5' |
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| 24071 | 3' | -61.5 | NC_005262.1 | + | 5183 | 0.67 | 0.393123 |
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Target: 5'- gCGUCGcGGGcGCGGGCGCGgC-CGGCGc- -3' miRNA: 3'- -GCGGC-CUC-UGCCCGUGC-GaGCCGUag -5' |
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| 24071 | 3' | -61.5 | NC_005262.1 | + | 33983 | 0.67 | 0.393123 |
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Target: 5'- uGCUGGAcGucgugcguaacAUGGGCGCGgaCGGCGUg -3' miRNA: 3'- gCGGCCU-C-----------UGCCCGUGCgaGCCGUAg -5' |
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| 24071 | 3' | -61.5 | NC_005262.1 | + | 35684 | 0.67 | 0.367871 |
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Target: 5'- aCGUC-GAG-CGGGCAcggaagcaucCGCUCcGGCGUCg -3' miRNA: 3'- -GCGGcCUCuGCCCGU----------GCGAG-CCGUAG- -5' |
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| 24071 | 3' | -61.5 | NC_005262.1 | + | 40849 | 0.67 | 0.367048 |
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Target: 5'- gGUgCGGGGACGGGCAUcagcacgcaaaauGC-CGGCAg- -3' miRNA: 3'- gCG-GCCUCUGCCCGUG-------------CGaGCCGUag -5' |
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| 24071 | 3' | -61.5 | NC_005262.1 | + | 57492 | 0.67 | 0.359704 |
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Target: 5'- aGCCGGccGACGaGGCGCcgaaGUUCaGCGUCg -3' miRNA: 3'- gCGGCCu-CUGC-CCGUG----CGAGcCGUAG- -5' |
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| 24071 | 3' | -61.5 | NC_005262.1 | + | 11581 | 0.68 | 0.320797 |
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Target: 5'- uGCCGGcGGCGGccaGCGCUCGaGCGa- -3' miRNA: 3'- gCGGCCuCUGCCcg-UGCGAGC-CGUag -5' |
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| 24071 | 3' | -61.5 | NC_005262.1 | + | 24884 | 0.68 | 0.313404 |
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Target: 5'- cCGCCGGcgcguGACaGGCGaGCUCGGCc-- -3' miRNA: 3'- -GCGGCCu----CUGcCCGUgCGAGCCGuag -5' |
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| 24071 | 3' | -61.5 | NC_005262.1 | + | 50826 | 1.08 | 0.000391 |
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Target: 5'- gCGCCGGAGACGGGCACGCUCGGCAUCc -3' miRNA: 3'- -GCGGCCUCUGCCCGUGCGAGCCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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